BAC Information

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BAC

Clone NameMSMg01-533P18
Chromosome2 (Build37)
Map Location 157,609,724 - 157,788,622
singlet/doubletdoublet
Overlap geneCtnnbl1, LOC100043681, Gm691
Upstream geneLOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
Downstream gene2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533P18.T7 (MSMg01no533_p18.b1)MSMg01-533P18.TJ (MSMg01no533_p18.g1)
ACCAG601777AG601778
length749757
length of high quality
(start - end)		661 (52 - 712)582 (74 - 655)
definitionCHROMAT_FILE: MSMg01no533_p18.b1 PHD_FILE: MSMg01no533_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:19 2005CHROMAT_FILE: MSMg01no533_p18.g1 PHD_FILE: MSMg01no533_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,787,981 - 157,788,622)(157,609,724 - 157,610,305)
sequence
TCNCCATTTTTTTTATTTGGGGCGTCTATACGACTCACTATTTCGAGAGG
ATCCGCGGAATTCACCTATTAAGTGTCACAGAGAGATAAAAATAATGGAC
AGGTGGACAGACAGACAGACACACATTTGAAGATAAATCTCAAAGACTAC
AAGAGAATAGATGCATAGTCTCTAAAGCAGTGTCAAAAAAAATGGCAGGT
GTTTTGTTGTTGATGTCTTGGTTTTTGACATGGGGTCTCACTACAAACCC
TGACTGACCTTGAAGTCACAAAGTTTCTTCCGCTTCGGTTTCCCAAGTGC
TAGACTTACAGGTGTGCACCGCCACACAAGGCGCGGGAGGCTTTTTTCCT
GGGCAGCACTGGATGACCTACAGAAAACTGGTATTCTGAGCATGCCCAGC
GTGGGGAGTCACTAATTCTCTACTAAATGAACTTTCAAGAAGGAGAATTA
GTTACAGGCATTTTCAGCTCATAGTTCATGACCCACAGCTTTACTGAAAA
GATTACAGAAGATAGCCAAACACACTGGTAAATCTAACTTCCATAATTTG
TTTTTTTATTTATTTGTGTAAGGCTGGGGATTACGGTCAGGCTTGTACAC
TATAGACACCCACTCCCCTACAGACCTATATTCCTGATTAATATATTCTA
GGGGTGTAGGCTCAGTAGGTAGAGTATTTACCTAGCATGCACAAAGCCCT
TGGTTTCATCTCCAGTTCAGTATAAGCCAGCGGGGTGGGCTCACAGCTG

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGCAAAAGCAGTGTANAAAGGCCTAC
TAGTACCTAGAATTATAAAGTCTTTGATCTCTCAGTTTCTCCCTTCCCTA
GGGATCTCCTGCTGCCTCGGCCGTATCAAGGGACCACACCTTGAGAACAG
CTAGCTGTTTTAATTGGGTGGAAGTATTGTCACGCTCCCTGTGCAGTGAT
GGCTGCTCGTGTGATGGCATCTCAGACTTGTCATGTTTTGTAGGCCTGTG
GTTTTGAACACTGAGGTTGTTTGTTACTATCCATTCTCAGGCTGAGGGGG
AACGCCCTGCGTGTCTGAACCAGATGAGCCTGGGCAGACCAGGGGACAGT
GTCTGTCTGTCAGATGGAGTCCATGACCCCATCTCTGCCTGGTTACTGTT
TTAATATGTTGCTCTATTGCTTTCCCATCGCTTCTCACCTGACCTCTGCC
CTGGCTGGGAGTCATGTGTTGCAGAAGCTGTGCTGGCTCCCTGAAGACAA
CCTTCTGCAAATAGTATGTGTGCTTTAAGTGAGTGGGCTGTACGTGGTCA
GCGGGAACAGAAGAGAATCGTCTTTTTGAGAACATAACAGACTCAAGGCA
GCTGCTGTGTGCCAACACTGTTGTAATTAGGCACTTTATATGTATTCTTT
CTTTAAATCCTCACTATCCTTCAACCAGGAAGATAAGGAAATCAAGATTT
AGAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_p18.b1 MSMg01no533_p18.b1 CHROMAT_FILE:
MSMg01no533_p18.b1 PHD_FILE: MSMg01no533_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:19 2005
         (661 letters)



>mm_chr2_157787570_157788630
          Length = 1061

 Score = 1195 bits (618), Expect = 0.0
 Identities = 636/642 (99%)
 Strand = Plus / Minus

                                                                        
Query: 20   aagtgtcacagagagataaaaataatggacaggtggacagacagacagacacacatttga 79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 aagtgtcacagagagataaaaataatggacaggtggacagacagacagacacacatttga 994

                                                                        
Query: 80   agataaatctcaaagactacaagagaatagatgcatagtctctaaagcagtgtcaaaaaa 139
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 993  agataaatctcaaagactacaagagaatagatgcatagtctctaaagcaatgtcaaaaaa 934

                                                                        
Query: 140  aatggcaggtgttttgttgttgatgtcttggtttttgacatggggtctcactacaaaccc 199
             |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 933  gatggcaggtgttttgttgttgatgtcttgggttttgacatggggtctcactacaaaccc 874

                                                                        
Query: 200  tgactgaccttgaagtcacaaagtttcttccgcttcggtttcccaagtgctagacttaca 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  tgactgaccttgaagtcacaaagtttcttccgcttcggtttcccaagtgctagacttaca 814

                                                                        
Query: 260  ggtgtgcaccgccacacaaggcgcgggaggcttttttcctgggcagcactggatgaccta 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  ggtgtgcaccgccacacaaggcgcgggaggcttttttcctgggcagcactggatgaccta 754

                                                                        
Query: 320  cagaaaactggtattctgagcatgcccagcgtggggagtcactaattctctactaaatga 379
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 753  cagaaaactggtattctgagcatgcccagcatggggagtcactaattctctactaaatga 694

                                                                        
Query: 380  actttcaagaaggagaattagttacaggcattttcagctcatagttcatgacccacagct 439
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 693  actttcaagaaggagaattagttacaggcattttcagctcgtagttcatgacccacagct 634

                                                                        
Query: 440  ttactgaaaagattacagaagatagccaaacacactggtaaatctaacttccataatttg 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 633  ttactgaaaagattacagaagatagccaaacacactggtaaatctaacttccataattta 574

                                                                        
Query: 500  tttttttatttatttgtgtaaggctggggattacggtcaggcttgtacactatagacacc 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  tttttttatttatttgtgtaaggctggggattacggtcaggcttgtacactatagacacc 514

                                                                        
Query: 560  cactcccctacagacctatattcctgattaatatattctaggggtgtaggctcagtaggt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  cactcccctacagacctatattcctgattaatatattctaggggtgtaggctcagtaggt 454

                                                      
Query: 620  agagtatttacctagcatgcacaaagcccttggtttcatctc 661
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453  agagtatttacctagcatgcacaaagcccttggtttcatctc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_p18.g1 MSMg01no533_p18.g1 CHROMAT_FILE:
MSMg01no533_p18.g1 PHD_FILE: MSMg01no533_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:20 2005
         (582 letters)



>mm_chr2_157609524_157610505
          Length = 982

 Score = 1089 bits (563), Expect = 0.0
 Identities = 577/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaaaagcagtgtanaaaggcctactagtacctagaattataaagtctttgatctctc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaaaagcagtgtaaaaaggcctactagtacctagaattataaagtctttgatctctc 260

                                                                       
Query: 61  agtttctcccttccctagggatctcctgctgcctcggccgtatcaagggaccacaccttg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 agtttctcccttccctagggatctcctgctgcctcggccatatcaagggaccacaccttg 320

                                                                       
Query: 121 agaacagctagctgttttaattgggtggaagtattgtcacgctccctgtgcagtgatggc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacaactagctgttttaattgggtggaagtattgtcacgctccctgtgcagtgatggc 380

                                                                       
Query: 181 tgctcgtgtgatggcatctcagacttgtcatgttttgtaggcctgtggttttgaacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctcgtgtgatggcatctcagacttgtcatgttttgtaggcctgtggttttgaacactg 440

                                                                       
Query: 241 aggttgtttgttactatccattctcaggctgagggggaacgccctgcgtgtctgaaccag 300
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aggtcgtttgttactatccattctcaggctgagggagaacgccctgcgtgtctgaaccag 500

                                                                       
Query: 301 atgagcctgggcagaccaggggacagtgtctgtctgtcagatggagtccatgaccccatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagcctgggcagaccaggggacagtgtctgtctgtcagatggagtccatgaccccatc 560

                                                                       
Query: 361 tctgcctggttactgttttaatatgttgctctattgctttcccatcgcttctcacctgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgcctggttactgttttaatatgttgctctattgctttcccatcgcttctcacctgac 620

                                                                       
Query: 421 ctctgccctggctgggagtcatgtgttgcagaagctgtgctggctccctgaagacaacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctgccctggctgggagtcatgtgttgcagaagctgtgctggctccctgaagacaacct 680

                                                                       
Query: 481 tctgcaaatagtatgtgtgctttaagtgagtgggctgtacgtggtcagcgggaacagaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgcaaatagtatgtgtgctttaagtgagtgggctgtacgtggtcagcgggaacagaag 740

                                                     
Query: 541 agaatcgtctttttgagaacataacagactcaaggcagctgc 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatcgtctttttgagaacataacagactcaaggcagctgc 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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