Query= MSMg01no534_i16.b1 MSMg01no534_i16.b1 CHROMAT_FILE:
MSMg01no534_i16.b1 PHD_FILE: MSMg01no534_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:05 2005
(701 letters)
>mm_chr2_160510981_160512082
Length = 1102
Score = 1321 bits (683), Expect = 0.0
Identities = 695/699 (99%), Gaps = 1/699 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgttat-caataaaatgaggctcacgatgtctattctttgccaagagatcctg 62
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttaaacaataaaatgaggctcacgatgtctattctttgccaagagatcctg 263
Query: 63 caagatatgaatagattatttgaactttcgtcatgaattcacttaatgacttgggggatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagatatgaatagattatttgaactttcgtcatgaattcacttaatgacttgggggatt 323
Query: 123 agaaggacaggcgtgtgtgctttgcccccgattgtcgttgctggcctgcttgtcagcagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaggacaggcgtgtgtgctttgcccccgattgtcgttgctggcctgcttgtcagcagt 383
Query: 183 gagtcctgtagagaatccagatgcttcacttgaacttcatcttcgaagtgtggtaactca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtcctgtagagaatccagatgcttcacttgaacttcatcttcgaagtgtggtaactca 443
Query: 243 ctatttgctttcacacacgacacttaggatggggcattaactttgaaccattggatgttg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctatttgctttcacacacgacacttaggatggggcattaactttgaaccattggatgttg 503
Query: 303 tagtgtcttctttggatctccagggctttgtaattgaaggcgaaacagctgtagaagtgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagtgtcttctttggatctccagggctttgtaattgaaggcgaaacagctgtagaagtgg 563
Query: 363 catttaggaattggggaaaatgtgctggaataagaagagctaatctttttaagccttcag 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 catttaggaattggggaaaatgtgctggaataagaagagctaatctttttaaaccttcag 623
Query: 423 attttattgcaagcaaactggttttaatgcttttagaaagaaaggagaatacattatcta 482
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attttgttgcaagcaaactggttttaatgcttttagaaagaaaggagaatacattatcta 683
Query: 483 tacttcatgctgtgaatatattttactgttgagactagatacttacacttcagatccacc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacttcatgctgtgaatatattttactgttgagactagatacttacacttcagatccacc 743
Query: 543 acttcatgaatggcagctttattttgggaggccattttctttactgagttaagtcagtga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acttcatgaatggcagctttattttgggaggccattttctttactgagttaagtcagtga 803
Query: 603 ggtctaatttgaagagatgtaacaagccaacctaggaaagaacattccaaggtttctgag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggtctaatttgaagagatgtaacaagccaacctaggaaagaacattccaaggtttctgag 863
Query: 663 tgtttgtccgtgtcaccggcaattctccttccccttccc 701
|||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgtttgtccgtgtcaccggcaattctccttccccttccc 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no534_i16.g1 MSMg01no534_i16.g1 CHROMAT_FILE:
MSMg01no534_i16.g1 PHD_FILE: MSMg01no534_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:05 2005
(673 letters)
>mm_chr2_160674338_160675411
Length = 1074
Score = 1249 bits (646), Expect = 0.0
Identities = 667/674 (98%), Gaps = 1/674 (0%)
Strand = Plus / Minus
Query: 1 actctatacaaggctggcctggaactcacaaagatctgcctgtctccaccatgcttgact 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 924 actctatacaaggctggcctggaactcaaaaagatctgcctgtctccaccatgcttgact 865
Query: 61 aaaatactttatatttttaactataatttctgaggaaaatatatattttaacttccataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aaaatactttatatttttaactataatttctgaggaaaatatatattttaacttccataa 805
Query: 121 caaaatacaaaggacctctagataccattaaggaaaactatagtatataaacatttcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaaatacaaaggacctctagataccattaaggaaaactatagtatataaacatttcagt 745
Query: 181 aacactaaattatatataatgtgcatgcaaaaactttattgaaagtggaacaactaaaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 744 aacactaaattatatataatgtgcatgcaaaaactttattgaaagtggaacagctaaaag 685
Query: 241 gcactccataattgagtttgaggttttacattttatgtacatgtacacagtttatatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcactccataattgagtttgaggttttacattttatgtacatgtacacagtttatatgaa 625
Query: 301 gataactgatgaagtcatctttcatatgcgaatgtctcatttatagttctctgcatcaca 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 gataactgatgaagtcatctttcatatgtgaatgtctcatttatagttctctgcatcaca 565
Query: 361 cttttataattcaaagaatgctataatatttc-aaacaaattggtaagcgtttcccttac 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 cttttataattcaaagaatgctataatatttcaaaacaaattggtaagcgtttcccttac 505
Query: 420 aagaaactaaaaatggaatagttctggaacaactgagttacagttttttcagtcacataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagaaactaaaaatggaatagttctggaacaactgagttacagttttttcagtcacataa 445
Query: 480 atgtgtgtcccagtgctgcttttcaaagccagaggacaaacattctaattgtggagttag 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtgtgtcccagtgctgtttttcaaagccagaggacaaacattctaattgtggagttag 385
Query: 540 aaaacaagaggagcacggtcacctgactgtacttgtttggtaagaaatgaagcacaatta 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 aaaacaagaggagcacggtcacctgactgtacttgtttggtaagaagtgaagcacaatta 325
Query: 600 ttttaaaaatacttctgtaagtttcttctttctcattttgggcagaacagtgggctttat 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 ttttaaaaatacttctgtaagtttcttctttctcattttgggcataacagtgggctttat 265
Query: 660 tgatagtatataca 673
||||||||||||||
Sbjct: 264 tgatagtatataca 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
