Query= MSMg01no534_j11.b1 MSMg01no534_j11.b1 CHROMAT_FILE:
MSMg01no534_j11.b1 PHD_FILE: MSMg01no534_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
(617 letters)
>mm_chr2_167339036_167340052
Length = 1017
Score = 1009 bits (522), Expect = 0.0
Identities = 592/616 (96%), Gaps = 3/616 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcattttcgtattttgtctgggcaagatgtgtgtactattttctgggccattc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcagcatttgagtattttgtctgggcaagatgtgtgtactattttctggaccattc 264
Query: 65 actttccattgaggaaggaattttgttttggtagtgtgagcatcctcacacttgggatgc 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 actttccattgaggaaggaattttgttttggtagtgtgagcatccgcacacttgggatgc 324
Query: 125 aatctgcgtgcatggacagagctaggtatcagcatcagatgtcttacgggtatctccacc 184
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aatctgcatgcatggacagagctaggtatcaacatcagatgtcttacgggtatctccacc 384
Query: 185 tagactggctagtggggcgagtctctgtggtccgtgtctccagtggagagcactgagatc 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagactggctagtggggcgagcctctgtggtccgtgtctccagtggagagcactgagatc 444
Query: 245 tcaggcgtgcacccgataccctcttcttacaatggcggtggggatctagactcaggttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaggcgtgcacccgataccctcttcttacaatggcggtggggatctagactcaggttct 504
Query: 305 tgtgcttgacacagtaagcactttaccaccacagtcatctctgcagccccaggaatggtt 364
| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 505 tatgcttgacacagtacgcactttaccaccacagtaatctctgcagccccaggaatggct 564
Query: 365 acttcctattttttagatttaattaatctcttt--ggttttttgagacagggtttctctg 422
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 acttcctaatttttagatttaattaatctctttttggttttttgagacagggtttctctg 624
Query: 423 tgtagccctggctgtcctggaactctttttgtagaccaggctggcctggaactcagaaat 482
||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 625 tgtagccctggctgtcctggaactcattctgtagaccaggctggcctcgaactcagaaat 684
Query: 483 ccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcctggctta 542
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 ctgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcccggctta 744
Query: 543 gatttaattaatttattttattttatttttatgggggtttttctgaatgtat-tttgtat 601
||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| |||||||
Sbjct: 745 gatttaattaattaattttattttatttttatgggtgttttcctgaatatatgtttgtat 804
Query: 602 accacatgtgtccaga 617
||||||||||||||||
Sbjct: 805 accacatgtgtccaga 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_j11.g1 MSMg01no534_j11.g1 CHROMAT_FILE:
MSMg01no534_j11.g1 PHD_FILE: MSMg01no534_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
(574 letters)
>mm_chr2_167510765_167511733
Length = 969
Score = 1038 bits (537), Expect = 0.0
Identities = 563/575 (97%), Gaps = 7/575 (1%)
Strand = Plus / Minus
Query: 1 attcctaatgtgtaaaaaccagagacttcacaccgcgcttccaatttccagttcttcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 attcctaatgtgtaaaaaccagagacttcacaccgcgcttccaatttccagttcttcctc 710
Query: 61 tgaacttgggtccctgaactggcctctctggtgtggtagctgtggctgtgatggttgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgaacttgggtccctgaactggcctctctggtgtggtagctgtggctgtgatggttgcta 650
Query: 121 aggcatttccagtatgggttgtatacactctgctgtgggaggacttagcccatctgcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aggcatttccagtatgggttgtatacactctgctgtgggaggacttagcccatctgcagg 590
Query: 181 aggaggaggaggctgaagctgaagctgaagctgagccccctcctccccaccctcaccccc 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aggaggaggag------gctgaagctgaagctgagccccctcctccccaccctcaccccc 536
Query: 241 agcctgcaagcagcagctgtgactcagtacagatgggacagccagggaccctccttacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agcctgcaagcagcagctgtgactcagtacagatgggacagccagggaccctccttacaa 476
Query: 301 gggtgctccagccatttctgtgacccttcagcatatagcataaggatgtgggatgtcctg 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 475 gggtgctccagccatttctgtgacccttcagcatatagcatagggatgtgggatatcctg 416
Query: 361 tctctgggccctg-tggccttctcctgacaggtaggggtgactcacctccctacagcccc 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctctgggccctgttggccttctcctgacaggtaggggtgactcacctccctacagcccc 356
Query: 420 acacagggcttaaggtggcaaagccttagaaatgctactcagcaggctgttgaggacagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acacagggcttaaggtggcaaagccttagaaatgctactcagcaggctgttgaggacagc 296
Query: 480 cctcagtggctcacaacttctcccagagcccgtgcgccacgcctgagctttgctgggggg 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 cctcagtggctcacaacttctcccagagcccgtgcaccacgcctgagctttgctgggggg 236
Query: 540 tagagcacttggtttcgttcccaactaagggaaat 574
|||||||||| ||||| ||||||||||||||||||
Sbjct: 235 tagagcactttgtttcattcccaactaagggaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 969
Length adjustment: 10
Effective length of query: 564
Effective length of database: 959
Effective search space: 540876
Effective search space used: 540876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
