BAC Information

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BAC

Clone NameMSMg01-534P14
Chromosome2 (Build37)
Map Location 107,563,912 - 107,564,147
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P14.T7 (MSMg01no534_p14.b1)MSMg01-534P14.TJ (MSMg01no534_p14.g1)
ACCAG602533AG602534
length775669
length of high quality
(start - end)		641 (35 - 675)241 (62 - 302)
definitionCHROMAT_FILE: MSMg01no534_p14.b1 PHD_FILE: MSMg01no534_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:39 2005CHROMAT_FILE: MSMg01no534_p14.g1 PHD_FILE: MSMg01no534_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCACT
GAGGAAATTCAAATGGTTGAGAAGCATGTAAAGAAATGTTCAACATCCTT
AGTCATCAGGGTAATGCAAATCAAAACAACCCTGAGATTTTACTTCACAC
AGGCAAAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATAGAGAAAGA
GGAGCACTCCTACATTGTTGGTGGGATTGCAATCTGATATAACCACACTG
GAAATCAGTCTAGTGTTTTCTCAGAAAATTTGACACAGTATTACCTGAGG
ACCCATCTATACCACTCCTGGCCATATACCTAAAAGATGTTCCAACATAT
AACAAGGACACATGCTCCACTATGTTCATAGCAATTTTATAATAGCCAGA
AGTTGGAAAGAACCTAGATGTCCTTCAACAGAGGAGTGGATACAGAAAAT
GTGGTACAATGGAGTATTATTCAGCTATTAAAAACAATGAATTCATGAAC
TTCTTAGGTAAATGGATGGAACTATAAAATATCATCCTCATTGAGGTAAC
CCAGTAACAAAAGAACATACATGATACACTCACTGATAAGTGAATATTAG
CCCAAAAGTTCGGAATACCCAAGGTACAATTCACAGACCACATGAAGCTC
AAGAAAAAGGAAGAGCAAAATGTGAGCACTTCTGTCCTTCTTAAAAGGGG
TAAGAAAATAGTCACGGAAACAAATACAGAGACAAAGTGCAGTGCATACT
CCTGAAGAAAGCCTATCCAGAAACT

GGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTTAATATGAACTGAGAACCATTTTATGATATTTCTAGGTGA
CTGCCCAAACCCTCCATGCCATTACTTGACAAGACAATGCATGAATTCCT
CACCAATGTGAAATGCTTCATTTAATTTCAAATCTCATATTTCCTTGGTC
TATTTCTGGGATTTCCATGACATCCAATCAATTAGACTGTTTTCTAACAC
CATANCCATTTTGATTTTTTAGCTTTATGTTTAAATACTACCATCTCTAA
ATCCCAATTAAATCCCCTAATAATATCCCATGTAAATTGAATCAGTATGA
AAACCATGAACTAAATTGAAATTTAAGGGGTTTTGAATTGGCCCAAAATA
AAAACTAAAAAAGGGAGTTTGTTGGGATTTACCCGGGGAAGCCCTTTAAA
GGAAAAAACCCCCCCCCCTTTTTTCCCCCCCCCCCCCCTTTTGAACCCCT
TTTTTTATTTCCCCCCGGGGGAAAAAAAAAGTTTTTCCCCATTTTTTTCA
AAAAAACCCCCCGGCGTTTTTTTTTTTCCCCCGGAGGGCTCTTTTTTAAA
AGAGGCCCTCGGGTTTTTTGGGGGGGGGGGGAGAAAAAAAAAAATTTTTT
TTTCTTTTTTTTAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p14.g1 MSMg01no534_p14.g1 CHROMAT_FILE:
MSMg01no534_p14.g1 PHD_FILE: MSMg01no534_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:39 2005
         (241 letters)



>mm_chr2_107563710_107564353
          Length = 644

 Score =  397 bits (205), Expect = e-115
 Identities = 229/237 (96%), Gaps = 5/237 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   tatgaactgagaa-cc-attttatgatatttctaggtgactgcccaaac-cctccatgcc 59
           ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 tatgaactgagaatccaattttatgatatttctaggtgactgcccaaacacctccatgcc 379

                                                                       
Query: 60  attacttgacaagacaatgcatgaattcctcaccaatgtgaaatgcttcatttaatttca 119
           |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 378 attacttgacaagacaatgcatgaattcttcgccaatgtgaaatgcttcgtttaatttca 319

                                                                       
Query: 120 aatctcatatttccttgg-tctatttctgggatttccatgacatccaatcaattagactg 178
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatctcatatttccttggttctatttctgggatttccatgacatccaatcaattagactg 259

                                                                    
Query: 179 ttttctaacaccatanccattttgattttttagctttatgtttaaatactaccatct 235
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttttctaacaccata-ccattttgattttttagctttatgtttaaatactaccatct 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 644
Length adjustment: 9
Effective length of query: 232
Effective length of database: 635
Effective search space:   147320
Effective search space used:   147320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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