XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAC
AACTAAATTTCTCTTGAAAAAAAAATCTTGGTGTAGAATATAGGTTAGGT
CCTAAGTGTTTGCTGTCTGAGAACAGTGGAAGCACCCACTGCCTCCCACA
TTGTACACCCCTTCACAGAGGGAATCACTCAGCATGTATTACATTATCAT
ATAATTTTCCTCCTCCTTTCATCTTTTTATGGTGAGTGGCTTCCTCTCCT
CTATATACTAATATCACATCTCTTGATAACGACAGACATCACTAGCCTTT
TCCCTGTGGTTTAGGGCATGCCTCTACTGGTTTAGTAGTATGATGCTAGC
TTCTGGACCTAAAGAATTTTCTTTCTCAGGTCTAGAGGACATCTTTCCAT
TGTGAGGCTGCACAGCGTGTTTTTTGGGATAATGTGATTCTGTCAATGTT
CTTTATTCCACTCTAGTCCCATTCTCTTTCTCACAATGACTTCCTTATGT
TACTTTCTGTCTTTTTAGAATAAAAGGTGATATCCATGTTTGCTTCGTAT
CTTTAGCAAGGACTTCTTTGCCTTTCTGATGAGGTGAAACCCAGNTATAC
ATGTTTATAATGTAATTGCAATCACTGTAGATCCAAATAGTGGGTTGTGA
TCACAAAGGTCTTAAGCTCATTCAGAACTGCTCTTTGAAGATATGTTTAG
TAACAAGAGCACATAGACACCCCTGTTTGTGTGAAATTAAAGTTTCAACC
TGGGCCTCCTTGGGAAAAAA

GGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACAGGAAGCGACTATGCTACATAGAACATTGAT
GAAAAGAAGTATTCATGAACTGAGACCAATTCTACAGNCAATCTTTCTTA
ACATCCTTCCTTTTTACAAAAAGGGTTCCCCTCCCTTTTAGCCCTGAANA
TTTCGGAGGCTTTANCCCTCCCTATCAAAAATTTCCCATAATTTAACTNN
NAATTTATACAATATGGTGNNNNNNNNNNNNNNNNNNNTTTTTAAGTTGG
GGNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAACAACGATTTTAATTAAAAAAAAAA
NCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTNNTTTTATT
TTGGTTTG

Query= MSMg01no534_p17.b1 MSMg01no534_p17.b1 CHROMAT_FILE:
MSMg01no534_p17.b1 PHD_FILE: MSMg01no534_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:40 2005
         (551 letters)



>mm_chr2_137353711_137354661
          Length = 951

 Score =  967 bits (500), Expect = 0.0
 Identities = 544/576 (94%), Gaps = 29/576 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttacaa-ctaaatttctcttgaaaaaaaaa-tcttggt--------------- 47
           ||||||||||||| ||||||||||||||||||||||| |||||||               
Sbjct: 176 gaattctttacaaactaaatttctcttgaaaaaaaaaatcttggttctttcttaagaacg 235

                                                                       
Query: 48  ------------gtagaatataggttaggtcctaagtgtttgctgtctgagaacagtgga 95
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttccccagctgtgtagaatataggttaggtcctaagtgtttgctgtctgagaacagtgga 295

                                                                       
Query: 96  agcacccactgcctcccacattgtacaccccttcacagagggaatcactcagcatgtatt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agcacccactgcctcccacattgtacaccccttcacagagggaatcactcagcatgtatt 355

                                                                       
Query: 156 acattatcatataattttcctcctcctttcatctttttatggtgagtggcttcctctcct 215
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acattatcatataattttcctactcctttcatctttttatggtgagtggcttcctctcct 415

                                                                       
Query: 216 ctatatactaatatcacatctcttgataacgacagacatcactagccttttccctgtggt 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctatatactaatatcacatctcttgataacgacagacatcactagccttttccctgtggt 475

                                                                       
Query: 276 ttagggcatgcctctactggtttagtagtatgatgctagcttctggacctaaagaatttt 335
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 476 ttagggcatgcctctactggtttagtagtatgatgctagcttctggacctaaggaatttt 535

                                                                       
Query: 336 ctttctcaggtctagaggacatctttccattgtgaggctgcacagcgtgttttttgggat 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctttctcaggtctagaggacatctttccattgtgaggctgcacagcgtgttttttgggat 595

                                                                       
Query: 396 aatgtgattctgtcaatgttctttattccactctagtcccattctctttctcacaatgac 455
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aatgtgattctgtcaatgttcgttattccactctagtcccattctctttctcacaatgac 655

                                                                       
Query: 456 ttccttatgttactttctgtctttttagaataaaaggtgatatccatgtttgcttcgtat 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttccttatgttactttctgtctttttagaataaaaggtgatatccatgtttgcttcgtat 715

                                               
Query: 516 ctttagcaaggacttctttgcctttctgatgaggtg 551
           ||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctttagcaaggacttctttgcctttctgatgaggtg 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)