Query= MSMg01no535_e06.b1 MSMg01no535_e06.b1 CHROMAT_FILE:
MSMg01no535_e06.b1 PHD_FILE: MSMg01no535_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:02 2005
(729 letters)
>mm_chr2_87649637_87650765
Length = 1129
Score = 1201 bits (621), Expect = 0.0
Identities = 633/637 (99%)
Strand = Plus / Minus
Query: 7 gaattcttgggacagtcactgatacataacagatttccagagaggaaaaatttgccagaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcttgggacagtcactgatacataacagatttccagagaggaaaaatttgccagaa 578
Query: 67 aaaaatacatgggtttatgcaatgtatggtcaagcctagttattaatataatgaggcaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaaaatacatgggtttatgcaatgtatggtcaagcctagttattaatataatgaggcaat 518
Query: 127 tgccagtgaggataatcatataaatgatggagaacagtgcagacagaatcccttggagat 186
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgccagtgaggataatcctgtaaatgatggagaacagtgcagacagaatcccttggagat 458
Query: 187 tgggaagagcagagaatcccagcagaacaaattgtatcactgtagaaatgttgacttctg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgggaagagcagagaatcccagcagaacaaattgtatcactgtagaaatgttgacttctg 398
Query: 247 cctcaatttcatcatgtttcatctgtagaaaggatttagtcggagtctgagtcatttctg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cctcaatttcatcatgtttcatctgtagaaaggatttagtcggagtctgagtcatttctg 338
Query: 307 tctttagctttgtttccttttctacaatccaagaatggttttcattcttagttatccatc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tctttagctttgtttccttttctacaatccaagaatggttttcattcttagttatccatc 278
Query: 367 ctctgtacaaattcattgctgttaataagtgtctgtgcaaaacctcatgttttatcattc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctctgtacaaattcattgctgttaataagtgtctgtgcaaaacctcatgttttatcattc 218
Query: 427 ttaagaaattgtattaatttttacagtattaataaattttatttattttataataataag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttaagaaattgtattaatttttacagtattaataaattttatttattttataataataag 158
Query: 487 atacaatgtttaatttgtagtgtttatttaaactcactattctttaaatttaaaatatat 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 157 atacaatgtttaatttgtagtgtttatttaaagtcactattctttaaatttaaaatatat 98
Query: 547 tcaaaataggctccttgattttatattcactatttacatacattttctctaactctcagt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tcaaaataggctccttgattttatattcactatttacatacattttctctaactctcagt 38
Query: 607 ttatttttattttatattcaaatgcatcatttttaat 643
|||||||||||||||||||||||| ||||||||||||
Sbjct: 37 ttatttttattttatattcaaatgtatcatttttaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space: 804561
Effective search space used: 804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_e06.g1 MSMg01no535_e06.g1 CHROMAT_FILE:
MSMg01no535_e06.g1 PHD_FILE: MSMg01no535_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:02 2005
(559 letters)
>mm_chr2_87482362_87483317
Length = 956
Score = 973 bits (503), Expect = 0.0
Identities = 545/559 (97%), Gaps = 3/559 (0%)
Strand = Plus / Plus
Query: 1 tcagctaaacttaatgtaacacctaaaatgtgttttagttggcaagcaagatggctcagt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctaaacttaatataacacctaaaatgtgttttagttggcaagcaagatggctcagt 260
Query: 61 gcataagaatgcataatgttcttttaagttcagtttatatcatatacatcacttctctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcataagaatgcataatgttcttttaagttcagtttatatcatatacatcacttctctta 320
Query: 121 ctccttaatttagctcatgttctaggtgatccaacactatcatttggaatgaagggcact 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttaatttagctcaggttctaggtgatccaacactatcatttggaatgaagggcact 380
Query: 181 actggtatctccctccaacataattaaaagtaaaataattcctttgaattatttgctgac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgatatctccctccaacataattaaaagtaaaataattcctttgaattatttgctgac 440
Query: 241 ttggcaatttgggtcacagtgacttttattgcagttaaaatacttatttatagataatta 300
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcaatttgtgttgcagtgatttttattgcagttaaaatacttatttatagataatta 500
Query: 301 atccataaacactaactttattactatgctataaaataaatatttaaatgaatcctgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccataaacactaactttattactatgctataaaataaatatttaaatgaatcctgaga 560
Query: 361 ttgaagagaaataactactatatagtgtatattcaattggacatatttcctaaattgcat 420
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaagagaaataactac-ata-a-tgtatattcaattggacatatttcctaaattgcat 617
Query: 421 agatccctctcaaactatgtacagttaccatggctttacatgactgaatacgccagtata 480
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 618 agatccctctcaaactatgtacagttaccatggctttacatgactaaatactccagtata 677
Query: 481 gcctctatttttaggatagagctactaaagataacaataaatgagatgctgtgggagtaa 540
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 678 gcctctatttttaggatagagctacaaaaaataacaataaatgagatgctgtgggagtaa 737
Query: 541 ttatctacattttctcatt 559
|||||||||||||||||||
Sbjct: 738 ttatctacattttctcatt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 956
Length adjustment: 10
Effective length of query: 549
Effective length of database: 946
Effective search space: 519354
Effective search space used: 519354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
