Query= MSMg01no535_h13.b1 MSMg01no535_h13.b1 CHROMAT_FILE:
MSMg01no535_h13.b1 PHD_FILE: MSMg01no535_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:18 2005
(700 letters)
>mm_chr2_71714639_71715737
Length = 1099
Score = 1110 bits (574), Expect = 0.0
Identities = 668/706 (94%), Gaps = 20/706 (2%)
Strand = Plus / Plus
Query: 6 ggaattctcttagccactgagccatctcttcaaccttataataaaagttttaaggatata 65
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 206 ggaattctcttagccactgagccatctcttcaaccttataataaaaattttaaggatata 265
Query: 66 catatttttttatgtggtc-acctgtccgcatcctttatttctaatatttgtttattttg 124
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catatttttt-atgtgg-ctacctgtccgcatcctttatttctaatatttgtttattttg 323
Query: 125 agaccatcttcctgccttcaccaccctagtgctgggattataggcatgtggca-ccacag 183
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 324 agaccatcttcctgccttcaccaccctagtgctgggattataggcacgtgccaaccacag 383
Query: 184 gctgcttgttaattttagagtgttactaattttgttttaaattacattttacagtttttt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctgcttgttaattttagagtgttactaattttgttttaaattacattttacagttttt- 442
Query: 244 ctctctctctctctgtctctctctctctctctctctctgtgtgtgtgtgtatgagagaga 303
|||| | ||||||||||||||||| | | | | | ||||||||||||||||||||||
Sbjct: 443 ctct-t---tctctgtctctctctctgtgtgtgtgt--gtgtgtgtgtgtatgagagaga 496
Query: 304 gagagagaga--------acccatgtgcttggattctcgtggaggtcagagaatttgcaa 355
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 gagagagagagagagagaacccatgtgcttggattcttgtggaggtcagagaatttgcaa 556
Query: 356 gagtctgttctctcgttccactatatggtcccagggctcagactttgtcagtaggttgga 415
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 557 gagtctgttctctcattccactatatggtctcagggctcagactttgtcagtaggtcgga 616
Query: 416 ggactggcgcctttacccactgagccatcttcctggtcctcggtccttgtcagtttgaga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggactggcgcctttacccactgagccatcttcctggtcctcggtccttgtcagtttgaga 676
Query: 476 cact-gttttgtgcaggcctggagctcagcatacagaccaggctgacatggaacttgcag 534
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 677 cacttgttttgtgcaggcctggagctcagcatacagaccaggttgacatggaactggcag 736
Query: 535 cgattctcttgcctctacctctctggtattacagggatgtgcttccgtgtccagttactg 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cgattcttttgcctctacctctctggtattacagggatgtgcttccgtgtccagttactg 796
Query: 595 tgtccagctaaaagctgctttcttctgttttttgaaacgggctcactgtatatacctggc 654
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 797 tgtccaggtaaaagctgctttcttctgttttttgaaacgggcttactgtatatacctggc 856
Query: 655 taggccagaactcactctgcagacctggctgatctttaactcagag 700
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 taggctagaactcactctgcagacctggctgatctttaactcagag 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space: 751410
Effective search space used: 751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_h13.g1 MSMg01no535_h13.g1 CHROMAT_FILE:
MSMg01no535_h13.g1 PHD_FILE: MSMg01no535_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:18 2005
(655 letters)
>mm_chr2_71899547_71900596
Length = 1050
Score = 988 bits (511), Expect = 0.0
Identities = 538/549 (97%), Gaps = 5/549 (0%)
Strand = Plus / Minus
Query: 107 cctgcctgaccagtatcagcaaaaacccacatcgagcggaaggcaccaattataaagact 166
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1050 cctgcctgaccagtatcagcaaaaacccacatcgagtggaaggcaccaattataaagact 991
Query: 167 tggcacagccgggcttgtaaccccagctgcttggaaggcagaagcagaaggatcacgagt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tggcacagccgggcttgtaaccccagctgcttggaaggcagaagcagaaggatcacgagt 931
Query: 227 tcaaggcctgcctgggctacagtgtgaattcaagaccacagtggtcaagaaagacaatgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tcaaggcctgcctgggctacagtgtgaattcaagaccacagtggtcaagaaagacaatgt 871
Query: 287 ctcaaagttttaaaacataaaacacaagtgaaaggctatagctcagcagtagagtttctg 346
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 870 ctcaaagttttaaaacataaaacacaagtgaaaggct----c-cagcagtagagtttctg 816
Query: 347 tgtgacatgtgagccctgggtttggtggcaggtgggctccagagtgcctagacaaagttg 406
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgtgacatgtgagccctgggttcggtggcaggtgggctccagagtgcctagacaaagttg 756
Query: 407 tagtaccttctgtagatcagttttgtggccacatttgacctcttgctccaggcttcctgg 466
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagtatcttctgtagatcagttttgtggccacatttgacctcttgctccaggcttcctgg 696
Query: 467 gctcaggaccctttagccttcttcttgccagatttgagggacctttatcttccttgaatt 526
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 695 gctcaggaccctttagccttcttcctgccagatttgagggaacttcatcttccttgaatt 636
Query: 527 tgagcaatggcaggcattggccttcctgatcccaatcccctgagcacatcttagcttcca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgagcaatggcaggcattggccttcctgatcccaatcccctgagcacatcttagcttcca 576
Query: 587 tagcaacctgtcttatttaggatgctttttgatcacgtggcttacttctccacaggagaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tagcaacctgtcttatttaggatgctttttgatcacgtggcttacttctccacaggagaa 516
Query: 647 agcttcact 655
|||||||||
Sbjct: 515 agcttcact 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1050
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1040
Effective search space: 670800
Effective search space used: 670800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
