BAC Information

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BAC

Clone NameMSMg01-535N14
Chromosome2 (Build37)
Map Location 41,016,991 - 41,017,253
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneMagmas-ps, LOC666531
Downstream geneLOC100042629, LOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535N14.T7 (MSMg01no535_n14.b1)MSMg01-535N14.TJ (MSMg01no535_n14.g1)
ACCAG603202AG603203
length801740
length of high quality
(start - end)
266 (48 - 313)228 (75 - 302)
definitionCHROMAT_FILE: MSMg01no535_n14.b1 PHD_FILE: MSMg01no535_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:47 2005CHROMAT_FILE: MSMg01no535_n14.g1 PHD_FILE: MSMg01no535_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGAGATCCCTCTACATCTGATTCCCCAGTGCTCAGATTGTA
GGCATGTGCCACCCTTGCCTACTTTCCAACAATTTTGATCCTTTGGATTA
TTTTAAGTTTGACTTTTTAATGTATGTTTGTTTTGAATCTGCGAAGCTAA
AAAGTAGAATTTTCTTTTCTTAAACAAAAGTTTTGTACATAATCACATAT
TCTGTAATTTGTTTCCTTTTTGGTGATTTTTTTATTACGTATTTTCCTCA
ATTACATTTCCAATGCTATNCCAAAAGTCCCCCCACACCCCCCAACCAAA
ACCCCCTTAACCCAAACNACAGAGCCCCCTTTTTTTTTTTTTGTGGGCGC
CGGGGGGGGGTCCCCCCCCCCGGGTGGGGGGGGGGGGAAAAAAAAAAAAA
TTATTTTTTTTGCCCCTCCAAAAAAGAGGGGGCCCCCCTCTTCTCTTTTT
CCTGGGGGGGGGGGGGGGGGGGGAAAAAAAAAAAAAAACACCTTTTTTTT
TTTTTTTTTATTAAAAAAAAAAAACAACCCCCCGCGCGGCGGAGAAGAAA
AAAATAAAATAACATTTCCCTCCCCCCCCCCCCGGGCTGGGGGGGGGGGG
GGCGAGGGTAAAAAAAAAAAATACTTTAGAATTTTTTTTTTTTTTTTTTT
CTTTTTGGGGGGGTGCCGGCTCCCCCCCCCCCCTCCCCCATAATGATATA
ACGAATATTTCTTTTTTTTTCTTATTTTTCATCTGAATCTGTGCATGGGG
G
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTACTTTGAACTAAGCAAACAAAC
AAACAAACAAACAAATCTCTTACAGGTGTGCCTTACATTTCTGGAGTATA
GTTCATCCCAGCTGTAGTCAAGTTGAAGACAAATAATAGCTATCACCCTC
CCCAAGAAGTACAGTTTTAACAAATTAGTTAGATAAATAGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGATGTTTTATAAATCACTATAGGAGAA
CTGGGTTTAGTGGGATTACACTTGGCACTCCCAGTCTGGGATAGATGAGG
AGTTAGATTGCTGCAATTTCAAGGCTACCCTGGGCTACATAGCTAGCTTT
NAGTGATGCTGAGCTATAGAGTAAAACTGTGTCTTAAGAAATAACCCGAT
TCCTCCTATTAATGCCATTTACCAAAGAATCCAAGGGCCGAAACTANAAT
GATTTTGAAAGTAGAATGTTGGAAGAAATTGGAATCCCCGGACCCCAGGA
ATAATTTTTGTGACAAAGGGTTGGACCTAATTTTCATGGGGAAGCGCGGG
GGTAAATACCTTTTTTCGGGGTTTGTCCTCCCCTATATTTGGGGGCAAAA
ACAAAACCTTGGTTGTGTGGTCTCTCCCCAAAAAAAAAAAAAAAAAAAAA
AAGGGGCCCCCCCCTAAACTAATAAATAAATAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_n14.b1 MSMg01no535_n14.b1 CHROMAT_FILE:
MSMg01no535_n14.b1 PHD_FILE: MSMg01no535_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:47 2005
         (266 letters)



>mm_chr2_41016772_41017437
          Length = 666

 Score =  478 bits (247), Expect = e-139
 Identities = 259/263 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcagagatccctctacatctgattccccagtgctcagattgtaggcatgtgcc 63
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 482 ggaactctcagagatccctctacatctgattccccagtgctcagattgaaggcatgtgcc 423

                                                                       
Query: 64  acccttgcctactttccaacaattttgatcctttggattattttaagtttgactttttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acccttgcctactttccaacaattttgatcctttggattattttaagtttgactttttaa 363

                                                                       
Query: 124 tgtatgtttgttttgaatctgcgaagctaaaaagtagaattttcttttcttaaacaaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 362 tgtatgtttgttttgaatctgcgaagctaaaaagtagaattttcttttcttaaacaaaat 303

                                                                       
Query: 184 ttttgtacataatcacatattctgtaatttgtttcctttttggtgatttttttattacgt 243
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 ttttgtacataatcacatattctgtaatttgtttccttttttgtgatttttttattacgt 243

                                  
Query: 244 attttcctcaattacatttccaa 266
           |||||||||||||||||||||||
Sbjct: 242 attttcctcaattacatttccaa 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)