Query= MSMg01no535_p04.b1 MSMg01no535_p04.b1 CHROMAT_FILE:
MSMg01no535_p04.b1 PHD_FILE: MSMg01no535_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:54 2005
(637 letters)
>mm_chr2_113723442_113724478
Length = 1037
Score = 1116 bits (577), Expect = 0.0
Identities = 624/649 (96%), Gaps = 16/649 (2%)
Strand = Plus / Minus
Query: 5 gaattctcaacttcagtcagcatttgtcatccaagaaccttgactatttactgtgaggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattctcaacttcagtcagcatttgtcatccaagaaccttgactatttactgtgaggta 590
Query: 65 atttggtccactggttgacattgatttcattttggcagtaggctcagttttgctggcatt 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 atttggtccactggttgacattgatttcattttggcagtagactcagttttgctggcatt 530
Query: 125 gccctatgaataggggcatatggcatctcatcactcaggtaaatctctataccttagatt 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gccctatgaatagggacatatggcatctcatcactcaggtaaatctctataccttagatt 470
Query: 185 tgcaaaacgatcaggactctgatagagtggactggaagtgccttatccaacacaaagaat 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 469 tgcaaaacgatcaggactctgatagagtgtactggaagtgccttatccaacacaaagaat 410
Query: 245 gctcaggaagcaattctcttggtttctatggatatagaaagagaaaactcgtactccatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gctcaggaagcaattctcttggtttctatggatatagaaagagaaaactcgtactccatc 350
Query: 305 ccccatttctcaatacagatcaaaccttggatctaataactcctaaacaggtgcatatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccccatttctcaatacagatcaaaccttggatctaataactcctaaacaggtgcatatca 290
Query: 365 ctgagctacacccaaacacccacggctatctatctcatttattaacaacagtttgttatc 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 289 ctgagctacacccaaacacccacggctatctatctcatttattaacaacagtctgttatc 230
Query: 425 ctactggttagaggtttgtat--------------aagaagtcacacatttaaaacaatt 470
||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 229 ctactggttagaggtttgtataagataaccttttaaagaagtcacacatttaaagcaatt 170
Query: 471 cagttcaggattggaatggccagtctccaaaatggccctctttacttcacagtatcttat 530
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 169 cagttcaggattggaatggccagtctccagaatggccctctttacttcacattatcttat 110
Query: 531 tccctctcacatatcacaggactgagctgtcaccaataggattattattaaactaaacat 590
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 109 tgcctctcacatatcacaggactgagctgccaccaataggattattattaaactaaacat 50
Query: 591 ttgtgtcccatccatatctc--gtcttaacctccaacgtgatggtctaa 637
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 49 ttgtgtcccatccatatctcaagtcttaacctccaacgtgatggtctaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p04.g1 MSMg01no535_p04.g1 CHROMAT_FILE:
MSMg01no535_p04.g1 PHD_FILE: MSMg01no535_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:55 2005
(590 letters)
>mm_chr2_113557347_113558337
Length = 991
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 ttgggacacgagaaaaaaaaatctcttcatctccagaaaaaccaatgaggtacaattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggacacgagaaaaaaaaatctcttcatctccagaaaaaccaatgaggtacaattgac 260
Query: 61 tcacagaaaactacatccagaatatgaactatatcaagactgagacttgatctcttggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagaaaactacatccagaatatgaactatatcaagactgagacttgatctcttggca 320
Query: 121 atgtcacaaaagcccactgattgcttgtcctctctatcctattaaattggcctccaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcacaaaagcccactgattgcttgtcctctctatcctattaaattggcctccaaata 380
Query: 181 ctcctttgtggagaatcttcctagggtgattattggaaaagaagtatctaaaggttgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ctcctttgtggagaatcttcctagggtgattattggaaaagaagtatctaaagcttgttg 440
Query: 241 ttttgattagagcatcttagtggggaggaggcttatgcatcctaaggacacagggaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgattagagcatcttagtggggaggaggcttatgcatcctaaggacacagggaaaga 500
Query: 301 taccagactagcatagaaagactctcttgcctgcttgaaccataacttattctcccatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taccagactagcatagaaagactctcttgcctgcttgaaccataacttattctcccatga 560
Query: 361 tgaatttttacatgtgcagttt-ttttttgtcctttaaattgcatagctaatgttctcat 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatttttacatgtgcagtttcttttttgtcctttaaattgcatagctaatgttctcat 620
Query: 420 tttcaaatttagactgttttgtgttattataacagtgcccagggctaggttatttacaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaaatttagactgttttgtgttattataacagtgcccagggctaggttatttacaag 680
Query: 480 cacaaatatgtaggttcagagtacgagacattgacaaggaccagtatcacaccaccacac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaaatatgtaggttcagagtacgagacattgacaaggaccagtatcacaccaccacac 740
Query: 540 cctggcaagcaaaggccttcttgctgcatcatccaccacaaggcagaa 587
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 cctggcaagcaaaggccttcttgctgcatcatccaccacaacgcagaa 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space: 568980
Effective search space used: 568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
