GGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCAGATACGAATTCTGTGAGCTACATACCAAGGCCCTGC
TTTTCTTTGGGAATGTCCTGCACTTTCCAACATTCCTCCTTCTACTTTGC
CAAGAACAAGTAAATAGAAGGTCTCTTTGAAGTGTGTACCCTGGGATATT
CAGAGGTGAGACTGCAGGGGAATGTCCAATCTGCAGAAAGAATCTCCATT
CACAACTTTCTGACCCAAAGCAGGGACTGGTGATGCCCATGTGACCAGGT
GTGGCTTTGGCCTAAGGCAGCCAAGTTTACTTTATAAAGTGCTACTATCT
CTGGGGTCATGTGACATCCCTATATAAACAGCATCTACAGGATATTCCTC
CTGGTCATTTGATACCATCCTAGCCAGAAGCTTAATATATTCTGTAACTA
TATCGTCCTTTTCACATTTCTTTCAGCTCCTCCAGCAGGAATCTCATATT
TAAATCATAGAACAAGAAATATTAGTTCCCGGAGTTTGAAATGTGTGTCC
AGAAAGACGAGACTGAGTTCAGAAAACAACCATCGGCTGCCACCTCTGTG
GAAGGGACTGCAGCATGGATGAGCAACAGCTGTCCTGAGAATACTGGGCA
TTTCTCCTTAAGCCCAGCACCCATGACTTTAGTTAACAAATAGTGGTGTC
TGAAGAAACGGTGGTTGGAATGCTCTAGATACAAAGGGTTTTCCTAAAAG
GCTCACGATTAATTGCT

CCCCCAATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGGACCAGTGGCACTGGTT
CCTTCTGGTCTGAACCGATGTCCTCAGCAGTCTTTGGGTACAAACTCTAC
AGCGAGTCCCACAACACCCAGAGGAAGCTCCACTCCCAGGCTCTCTAACA
TGCCCAGGATCATTGGATCAGAGATGCTCTGAGAAGACCTTGGGTGCTAA
CTCCACAGCCAACCCCACAACACCCAGAGAAGAAGCTCCACTACCTGGCA
CTCTAGCACACCTAGGACCATAAGATCCCAGGATCCCAGGAGCTTGGTCA
CTCCAGGATCTTAGGGTCCCAGAGGCAGCTTGACTCCCAGGAGCTCTGGG
ATATCAAGGGCAGGTAGCACTAGAGATAATCAGATGGCAGGAGGCAAGCA
TAAGAACAGAAGCAACAGAAACCAAGGATACTTGGCATCATCAGAACCCA
ATTCTCCCACCATAGCAAGTCCTGGATACACCATCACACCGGAAAAGCAA
GATTCAGATCTAAAAATCACTTCTCATGATGGTGATAGAGGACATTAAGA
AATAACTCCTTTAAAGAAATACAGGAGAACATAGGTAAACAGCCAGAAGC
CCTTATAGAGAAAACACAAGAATCCCTTTAAGATTACAGTAAACACAATC
CAAAAGGCGAAAGAAATGAACAAATTCTTCCAGATCTAAATTTGGAATAG
ATACCATAAGAATCACAAAGGAGC

Query= MSMg01no536_h11.b1 MSMg01no536_h11.b1 CHROMAT_FILE:
MSMg01no536_h11.b1 PHD_FILE: MSMg01no536_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:34 2005
         (583 letters)



>mm_chr2_20949578_20950560
          Length = 983

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgagctacataccaaggccctgcttttctttgggaatgtcctgcactttccaacat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 783 tctgtgagctacataccaaggccctgcttttctttgggaatgtcttgcactttccaacat 724

                                                                       
Query: 61  tcctccttctactttgccaagaacaagtaaatagaaggtctctttgaagtgtgtaccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcctccttctactttgccaagaacaagtaaatagaaggtctctttgaagtgtgtaccctg 664

                                                                       
Query: 121 ggatattcagaggtgagactgcaggggaatgtccaatctgcagaaagaatctccattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggatattcagaggtgagactgcaggggaatgtccaatctgcagaaagaatctccattcac 604

                                                                       
Query: 181 aactttctgacccaaagcagggactggtgatgcccatgtgaccaggtgtggctttggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aactttctgacccaaagcagggactggtgatgcccatgtgaccaggtgtggctttggcct 544

                                                                       
Query: 241 aaggcagccaagtttactttataaagtgctactatctctggggtcatgtgacatccctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaggcagccaagtttactttataaagtgctactatctctggggtcatgtgacatccctat 484

                                                                       
Query: 301 ataaacagcatctacaggatattcctcctggtcatttgataccatcctagccagaagctt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ataaacagcatctacaggatactcctcctggtcatttgataccatcctagccagaagctt 424

                                                                       
Query: 361 aatatattctgtaactatatcgtccttttcacatttctttcagctcctccagcaggaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatatattctgtaactatatcgtccttttcacatttctttcagctcctccagcaggaatc 364

                                                                       
Query: 421 tcatatttaaatcatagaacaagaaatattagttcccggagtttgaaatgtgtgtccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcatatttaaatcatagaacaagaaatattagttcccggagtttgaaatgtgtgtccaga 304

                                                                       
Query: 481 aagacgagactgagttcagaaaacaaccatcggctgccacctctgtggaagggactgcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagacgagactgagttcagaaaacaaccatcggctgccacctctgtggaagggactgcag 244

                                                      
Query: 541 catggatgagcaacagctgtcctgagaatactgggcatttctc 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catggatgagcaacagctgtcctgagaatactgggcatttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)