Query= MSMg01no536_i01.b1 MSMg01no536_i01.b1 CHROMAT_FILE:
MSMg01no536_i01.b1 PHD_FILE: MSMg01no536_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:37 2005
(567 letters)
>mm_chr2_18368676_18369642
Length = 967
Score = 1036 bits (536), Expect = 0.0
Identities = 554/564 (98%), Gaps = 8/564 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaggctattccaaaccaagtatccccttcctttaaaggcaaaatgtctgtctgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattcaggctattccaaaccaagtatccccttcctttaaaggcaaaatgtctgtctgt 748
Query: 64 cagtctgtctgtctgtctgtctgtttgtttagagtgcatggaagggaggatgttggagga 123
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 -a-------tgtctgtctgtctgtttgtttagagtgcatggaagggaggatgttggagga 696
Query: 124 ctcacagaagtcagttcatagaggtagagagcagctcaaaactttgcagcaacactttcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctcacagaagtcagttcatagaggtagagagcagctcaaaactttgcagcaacactttcc 636
Query: 184 caaaaatctcttcaataaactcacagaaccctggccatactttgagcctcttttccatgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caaaaatctcttcaataaactcacagaaccctggccatactttgagcctcttttccatgt 576
Query: 244 ggacacagagttaagaagtattgccaggtaactgtttccacatggtgatgggggaactgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggacacagagttaagaagtattgccaggtaactgtttccacatggtgatgggggaactgg 516
Query: 304 ctgtctctcacagaggtgctctgattcctaagattgctcctctcgttggttggcagtgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctgtctctcacagaggtgctctgattcctaagattgctcctctcgttggttggcagtgag 456
Query: 364 gtcaaaagggtcagccatcttcttccatcgtcatcatcttatttgatccaagaatagtaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtcaaaagggtcagccatcttcttccatcgtcatcatcttatttgatccaagaatagtaa 396
Query: 424 ggtaccagtcaaggagatgaaatctgcagaggttacactgactaaaaagctacatcttag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtaccagtcaaggagatgaaatctgcagaggttacactgactaaaaagctacatcttag 336
Query: 484 atttacacttttctttctttctttgatttttcatttattcttgattttttattagatatt 543
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 335 atttacacttttctttctttcttttatttttcatttatttttgattttttattagatatt 276
Query: 544 ttctttacttacatttgaaatgtt 567
||||||||||||||||||||||||
Sbjct: 275 ttctttacttacatttgaaatgtt 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_i01.g1 MSMg01no536_i01.g1 CHROMAT_FILE:
MSMg01no536_i01.g1 PHD_FILE: MSMg01no536_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:38 2005
(658 letters)
>mm_chr2_18264305_18265362
Length = 1058
Score = 1257 bits (650), Expect = 0.0
Identities = 656/658 (99%)
Strand = Plus / Plus
Query: 1 aatactatgcatatttattattttaaaccagactctagtctgaacagagacacatatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactatgcatatttattattttaaaccagactctagtctgaacagagacacatatata 260
Query: 61 tgcatatattatatatccacaaaccatatatgataactcataaaatgagctcatatatga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgcatatattatatatccacaaaccatatatgataactcataaaatgagctcgtatatga 320
Query: 121 agttagtagattatattattaaagttaaaatgttcaaactggatagagcttcataaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttagtagattatattattaaagttaaaatgttcaaactggatagagcttcataaacca 380
Query: 181 aatcatctataatcttaatttctatcaaatgatcagatggttttaattatagaacaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatctataatcttaatttctatcaaatgatcagatggttttaattatagaacaatgt 440
Query: 241 aaatatgtatatatgagtgtatgtatgtatgtggccaatactctaccaaaattgaaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatatgtatatatgagtgtatgtatgtatgtggccaatactctaccaaaattgaaatgc 500
Query: 301 aaagacctgttaactgaaatgtgaaaagataatagcaataccaattaaaaacattaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagacctgttaactgaaatgtgaaaagataatagcaataccaattaaaaacattaattt 560
Query: 361 cattttaaacatttgattttttaaacacttgattcttattaaaatcttttactaacttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttaaacatttgattttttaaacacttgattcttattaaaatcttttactaacttat 620
Query: 421 tagatatgcacggtcattttaatactaggtataaacatactactagcacttttatatact 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tagatatgcacggtcattttaatactaggtataagcatactactagcacttttatatact 680
Query: 481 ttttccaataaatatcaatggcaataatatagacatctaagacacttaagtagccatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttccaataaatatcaatggcaataatatagacatctaagacacttaagtagccatttt 740
Query: 541 tcaaattactagtgggtttgttgaattaatttcacatgacattaattcattcttaaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaattactagtgggtttgttgaattaatttcacatgacattaattcattcttaaatat 800
Query: 601 gattttttaaaagtctactttggattgtatattagtaaaataatgtaaagcacacatg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gattttttaaaagtctactttggattgtatattagtaaaataatgtaaagcacacatg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
