TTCCGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTTTTCCTGCAGATTCTATACTCAGAAAGTGCACAGTG
CCATCATGGCCATCAAACGTACTGCAGGGACTATACTGTACTTAGCCAGA
TTTTGAGGAGGGACAGTAAACCACAACCTCTAGGACAAATTTGCCAAGGT
CCCTCAAGCGCCCCACCAGGAGCAGTGTAGACCCACAAGATTCTATCTCA
GGGCCTTTGTTCCTAGTGACACAAGGCCACATAGGCCAGGCTTCCCAGGA
CCATTTTTGAACAGGGCAGTTCAGACTCCTTTAGAAGATTCTAGATGTGG
ACACATCTGCATGACTTCACTGTGCCAGCCACAGGGCATTTCTAGTTAAC
ATGCCTGAGATTCCCCGGTTCCTGGTCTCCACCCCTCCCTTCCCCACCAG
CTTGCAGCAACACCATCCAAACAATTGCTTAAGGGACAATATTGCGGTCA
CCCTGAGCTCTCACAGCCCCATTTCCTACAAATCAGCGAGTTCTGTGGCT
CTGTCTCTAAGGTGTCTGTCGCCTCCTCCCACGGTACCCAGAGACCTCCC
CTCATCTGCCTGGATGACATGGTAGTTCCTCAAGTTTCCCGGTTATTTCC
CCACCATCTTGCCCACAGCAGAGCCAGAACAAGTCTCTAGATACCTCGCA
TCCCCTTCTGTCTATAGGCAAAGCACCTCATGTGGCTTAACATTTAGATT
CGGACCCAGGTATGATCCTCAGTCATCTN

CCCCCCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGATTGAATCTCCG
AGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGGGATTA
AAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGA
CAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTGCTCCTT
TGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGACTTCCA
TTCACAGCTGCGACTGAACAATTGTTGGGAATTCGGCTGCCGACTGTAAG
TCATCAATAAATTTCTTTACTATTTAGAGATTATCCATAAGTTCTGTGAC
TCTAGAGAACCCTGACTAATACAGAAGTTGGTACCAGGAGTGGTTCTAGA
GTAACAGAAGTAGAAGGATGAATCTTTTAAAATACTGGAATTGGCTTGTT
GATCCACCAGCACTTTCAAATATTGAAACCTCTCCAGATTCTCTCCCTCC
TGGGAGCTCAGAGAATTTTGAAGACCCATGGTTGAAACTATATTCCGAAC
TTAAAGAAGCTAATGACCTTGATTTTCTTAATGAATTANGTGATTCAGTG
CACAAAGCTTTCTACAAGATGGGGAAAAAATCGGAAAATGATTTTACTGG
CTGGCTGCTCTTAGTATCTGTGTGAAAAATGATGAATTGAAAGAAGGAGT
TTTGTGATTAATCCACAGGGTCCTAN

Query= MSMg01no536_n05.b1 MSMg01no536_n05.b1 CHROMAT_FILE:
MSMg01no536_n05.b1 PHD_FILE: MSMg01no536_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:02 2005
         (580 letters)



>mm_chr2_168299480_168300459
          Length = 980

 Score =  992 bits (513), Expect = 0.0
 Identities = 528/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttttcctgcagattctatactcagaaagtgcacagtgccatcatggccatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattcctttttcctgcagattctatactcagaaagtgcacagtgccatcatggccatca 474

                                                                       
Query: 65  aacgtactgcagggactatactgtacttagccagattttgaggagggacagtaaaccaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aacgtactgcagggactatactgtacttagccagattttgaggagggacagtaaaccaca 414

                                                                       
Query: 125 acctctaggacaaatttgccaaggtccctcaagcgccccaccaggagcagtgtagaccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acctctaggacaaatttgccaaggtccctcaagcgccccaccaggagcagtgtagaccca 354

                                                                       
Query: 185 caagattctatctcagggcctttgttcctagtgacacaaggccacataggccaggcttcc 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 353 caagattctatctcagggcctttgtgcctagtgacacaaggccacataggccaggcttcc 294

                                                                       
Query: 245 caggaccatttttgaacagggcagttcagactcctttagaagattctagatgtggacaca 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 293 caggaccatttttgaacagggcagttcagactcctttagaagattccagatgtggacaca 234

                                                                       
Query: 305 tctgcatgacttcactgtgccagccacagggcatttctagttaacatgcctgagattccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tctgcatgacttcactgtgccagccacagggcatttctagttaacatgcctgagattccc 174

                                                                       
Query: 365 cggttcctggtctccacccctcccttccccaccagcttgcagcaacaccatccaaacaat 424
           | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 173 cagttcctggtctccacccctcccttctccaccagcttgcagcaacaccatccaaacagt 114

                                                                       
Query: 425 tgcttaagggacaatattgcggtcaccctgagctctcacagccccatttcctacaaatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tgcttaagggacaatattgcggtcaccctgagctctcacagccccatttcctacaaatca 54

                                                                
Query: 485 gcgagttctgtggctctgtctctaaggtgtctgtcgcctcctcccacggtacc 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gcgagttctgtggctctgtctctaaggtgtctgtcgcctcctcccacggtacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)