Query= MSMg01no536_p21.b1 MSMg01no536_p21.b1 CHROMAT_FILE:
MSMg01no536_p21.b1 PHD_FILE: MSMg01no536_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(284 letters)
>mm_chr2_171633204_171633884
Length = 681
Score = 472 bits (244), Expect = e-137
Identities = 274/294 (93%), Gaps = 17/294 (5%)
Strand = Plus / Plus
Query: 5 gaattcaaacaatacttgctgagtaatttctg--------------caccgacgagaata 50
||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 191 gaattcaaacaatacctgctgagtaatttctgttttttaagcgacacaccgacgagaata 250
Query: 51 gagaagtgaaagagaatgaaaatgtcaagcgtgcatctttcagaggaggaacagacttcc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagaagtgaaagagaatgaaaatgtcaagcgtgcatctttcagaggaggaacagacttcc 310
Query: 111 tacagtaaaggacctcacattggagccaccacaacggactccgcactttgcttcaggaaa 170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 tacagtaaaggacctcacattggagccaccacaacggactccacactttgcttcaggaaa 370
Query: 171 acagagaaatcaagcccaaggctatgtcatgacacaagttatgcatctgtctgtgacaga 230
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 371 acagagaaatcaagcccaaggctatgtcgtgacacaagttatgcatctgtctgtgacaga 430
Query: 231 caatgcaactgtgtggcggggagactgggataggtggtggaggagtaggaggag 284
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 431 caatgcaactgtgtggcggggagactgggataggtgg---aggagtaggaggag 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 681
Length adjustment: 9
Effective length of query: 275
Effective length of database: 672
Effective search space: 184800
Effective search space used: 184800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no536_p21.g1 MSMg01no536_p21.g1 CHROMAT_FILE:
MSMg01no536_p21.g1 PHD_FILE: MSMg01no536_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(574 letters)
>mm_chr2_171801648_171802621
Length = 974
Score = 712 bits (368), Expect = 0.0
Identities = 374/376 (99%)
Strand = Plus / Minus
Query: 199 ggtgggagcggggcggcatccaggcaggtgtggtgcaggaggagctgagagttctacatc 258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 974 ggtgggagcggggcggcatccaggcaggcgtggtgcaggaggagctgagagttctacatc 915
Query: 259 ttcatctgaaggctgctagcagaatactggcttccaggcacctagaatgtggtccacacc 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ttcatctgaaggctgctagcagaatactggcttccaggcacctagaatgtggtccacacc 855
Query: 319 cacagtgacactcctactctaacaaggtcacaacttctaatagtgccactccctgggcct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cacagtgacactcctactctaacaaggtcacaacttctaatagtgccactccctgggcct 795
Query: 379 agcatatacaaaccatcacacatagcactgtgcccagtacacaggtttcttttagctgga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agcatatacaaaccatcacacatagcactgtgcccagtacacaggtttcttttagctgga 735
Query: 439 aacagtctggagtcacccttagtcacctccagagtttccttgctgttaatttttaatttc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aacagtctggagtcacccttagtcacctccagagtttccttgctgttaatttttaatttc 675
Query: 499 ataagtaatttaggaccagtgttttattgttaaaaattaaatcatagcagacttgtgaag 558
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 674 ataagtaatttaggaccagtgttgtattgttaaaaattaaatcatagcagacttgtgaag 615
Query: 559 ttgacgtttctactcc 574
||||||||||||||||
Sbjct: 614 ttgacgtttctactcc 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
