BAC Information

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BAC

Clone NameMSMg01-537B04
Chromosome2 (Build37)
Map Location 12,057,149 - 12,057,564
singlet/doubletsinglet
Overlap geneItga8
Upstream genePrkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247
Downstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537B04.T7 (MSMg01no537_b04.b1)MSMg01-537B04.TJ (MSMg01no537_b04.g1)
ACCAG604132AG604133
length754757
length of high quality
(start - end)		381 (52 - 432)652 (81 - 732)
definitionCHROMAT_FILE: MSMg01no537_b04.b1 PHD_FILE: MSMg01no537_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:21 2005CHROMAT_FILE: MSMg01no537_b04.g1 PHD_FILE: MSMg01no537_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGAATGTAACGACCATCCTATCCCCTCAAACAAATTA
GATAAACTGTGGGGGGGGGGAGAGGGAGAGAGAGAGGGGGGGAAAGAAGG
GGAGAGAGAGAGAGCGCACAGAGAAGAGTTCAACTAAAGAGGCTAGACTA
GGGTACAACAGGGGCACCAGCTAGGGTCTGGAAAACCAACTGTGCTATTA
GGTTATTTGCTTTATGAAAAGGGTACATGTTCTTTGGGGTCCGGGGTGTT
AAGTCCCAGGTGAACATCCCTGTCTGCAGACTCTTTTTCTTCCTGAGTTC
TGAACTCTGACCAGCTCCTCTGGGGGCCTCAGTCTTGGTGGTCAGCAGAG
ACAGAGATAACACACATGAGTTCTGAAGAAGACAAACAAACAGGACTGCA
AGTGGGGAACTGAGAAAAGTCCTGAATTGACTTCTTCTCTATTCCTATAG
CTCTGTATTGACCCTGAGTTAATTTTTAAGGCACAGAAAAAAAATATTTA
AAAGCCTGATAATTCTAACTACTTAATTCCGTCTAATAAAATAGGATCAT
GGCATCCCCAATCTCAGCGCTTATATTCCAGAATATGATACTTGCCATGT
GGTCTACCCCTAATGTTAATTACTAGCATTCCCCAGAGGATGGGTACGAT
TAACTATGGACCACCTTGGACCAAGCTTCTTATTTCATTGGGGACCAAAT
GACT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCAC
ATTTTTAAATGGGGTTATTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCT
TTGTATATATTGGATATTAGTCCTCTATCAGATTTAGGATTGGTAAAAAT
TCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTATCTTTTG
CCCTACAGAAACTTTGCAATTTTATGAGGTCCCATTTGTGGATTCTTGAT
CTTGCAGCACAGACCATTGATGTTCTGTTCAGGAATTTTTCCCCTGTGCC
CATATCTTCAAAGGTTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCT
TTGGTTTTATAAGGAATTCTTTGATCCACTTAGACTTGAGCTTTGTACAA
GGAGATAAGAATGGATCAATTCTCATTCCTCTACATGATAACCGCCAGTT
GTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGCTTT
TAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCT
GGGTCTTCAATTCTATTTCATTGATCTACCTGTCTGTTGCTGTACCAATA
CCATGCAGTTTTTATCACTATTGCTCTGTAATACAGCTTCAGGTCAAGGA
TGTTGATTCCCGCAGAAGTTCTTTTATTGTTGAGAATAGTTTTAGGTTTG
TTGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_b04.b1 MSMg01no537_b04.b1 CHROMAT_FILE:
MSMg01no537_b04.b1 PHD_FILE: MSMg01no537_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:21 2005
         (381 letters)



>mm_chr2_12056835_12057613
          Length = 779

 Score =  549 bits (284), Expect = e-161
 Identities = 367/418 (87%), Gaps = 43/418 (10%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgaatgtaacgaccatcctatcccctcaaacaaattagataaactgtggggg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcactgaatgtaaagaccatcctatcccctcaaacaaattagataaactgtggggg 671

                                                                       
Query: 65  gggg---gagagggagagagagag-ggg-------------------ggga--------- 92
           ||||   ||||||||||||||||| |||                   ||||         
Sbjct: 670 ggggggagagagggagagagagagagggaaagaggaggagagagagagggagagaggggg 611

                                                                       
Query: 93  a---aga-aggg-----gagagagagagagcgcacagagaagagttcaactaaagaggct 143
           |   ||| ||||     ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 agggagagaggggaagagagagagagagagagcacagagaagagttcaactaaagaggct 551

                                                                       
Query: 144 agactagggtacaacaggggcaccagctagggtctggaaaaccaactgtgctattaggtt 203
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 550 agactagggtacaacaggggcaccagctagggtctggaaaaccaactgtgctgttaggtt 491

                                                                       
Query: 204 atttgctttatgaaaagggtacatgttctttggggtccggggtgttaagtcccaggtgaa 263
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 490 atttgctttatgaaaagagtacatgttctttggggtctggggtgttaagtcccaggtgaa 431

                                                                       
Query: 264 catccctgtctgcagactctttttcttcctgagttctgaactctgaccagctcctctggg 323
           |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 430 catccctgtctgcagactctgtttcttcctgaggtctgaaccctgaccagctcctctggg 371

                                                                     
Query: 324 ggcctcagtcttggtggtcagcagagacagagataacacacatgagttctgaagaaga 381
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 370 ggcctcagtcttggtggtcagcagagac--agataacacacatgagttctgaagaaga 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 779
Length adjustment: 9
Effective length of query: 372
Effective length of database: 770
Effective search space:   286440
Effective search space used:   286440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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