NGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGTTTTACTTTGATGTTTATCCATTTTAAATTTAAGATT
ATATAAATATTTATTTATACTTTTGGATTTTTTTCAAATGATGTCTTTCT
TTTTCAGACATTAACAAATTTAAACCATGTGGAGTTGATTGTCTTTAAAA
TATAAAAATGTAATGTTAGGGCTGACTAGGGATGGAGAAGGAGCTTTGGG
AGAGAAGATGGAAGAGAAGGGGATGAAGAAGTTTAACACCGAGTTTATGT
GTGCATGGAAACATCCCAGCAAATCTCAATGATTTGCTAATGCATTCATA
GTTATAATAAAAATCAATTTTATTTAAAGTTTTTTCCCCATGGGTGTTGG
TTGAGTCTTGTGCGTGTGCATGTGCATTTGCGTGTGTGTGACTCACTTCT
TACTTCAGTATGATTAAACATTCCCTCTGGCTCTTGTTTTGTAGGCATCA
TCTCTCAACACTTGACATTGTCCAAGCCATTTCATATGTCTACTTGCCAT
GGGTCTTCTTCACAGAGTAGGGAGTTTTGAAAGTAGGAGTTTTTGCTCTC
TACTGAATGTCAGTGCCTTGAAAACTCTGACCTACATTAAACAAAACAAA
ACAAAAATCAAAGCAAAACAACACCTGTATGTGGTTATAGAATTTACAGA
TAATTAAGCACAATTTAATTTTTGTTTCCTTCATGGTTATATATA

TTTCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGTCTACAG
AGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCACAAA
ACAAAAGCAAACAAACAAAACAAACAAACAAAAAATAGTAGGAGAATTCA
ACACCCCACTCTCATCTATGGACAGATCATGGAAACACAAACTAAACAGA
GATACATTGAAACTATCAGAAATTATGGATCAAATGGATTTAACAGATAT
TTATAGAACATTTAATCCTAAAACAAAAGACTATGCCTTCTTCTCAGCAC
CTCATGGTACCTTCTCCAAAATTGACGACAAAACAGGCCTCAACAGATAC
AAGAAGACTGAAATAATCTCATACATCCTATGACAGACTAGGGGCTAGTC
TTCAATAGCAACAAAAACAACAGAAAGCATACATGTACATGAAAGCTGAA
CAAAGCCCTATTCAACGAGAACTTGATCAAGGAAGAAATAAAGAACTTAA
AGACTTTTTAGATTTTAATGAAAATCAAGGCACAGCATACCCAAACTTAT
GGGACACTTATGAAAGCAGTGCTAAGAGGAAAACTCAGCTCTCAGTGCCT
CCAGAACAAAACTGGAGAGAGCATACACTAGCAGCTTAACAGCACACCTG
AAATCTCCAGAACAAAAAGAAGCAAATACACCCAAGACCAGTAGA

Query= MSMg01no537_h12.b1 MSMg01no537_h12.b1 CHROMAT_FILE:
MSMg01no537_h12.b1 PHD_FILE: MSMg01no537_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:50 2005
         (679 letters)



>mm_chr2_9369323_9370401
          Length = 1079

 Score = 1237 bits (640), Expect = 0.0
 Identities = 664/672 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgttttactttgatgtttatccattttaaatttaagattatataaatatttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattcttgttttactttgatgtttatccattttaaatttaagattatataaatatttat 794

                                                                       
Query: 65  ttatacttttggatttttttcaaatgatgtctttctttttcagacattaacaaatttaaa 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttatacttttggatttttttcagatgatgtctttctttttcagacattaacaaatttaaa 734

                                                                       
Query: 125 ccatgtggagttgattgtctttaaaatataaaaatgtaatgttagggctgactagggatg 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 733 ccatgtggagttgattgtctttaaaacataaaaatgtaatgttagggctgactagggatg 674

                                                                       
Query: 185 gagaaggagctttgggagagaagatggaagagaaggggatgaagaagtttaacaccgagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 673 gagaaggagctttgggagagaagatggaagagaaggggatgaagaagtttaacacagagt 614

                                                                       
Query: 245 ttatgtgtgcatggaaacatcccagcaaatctcaatgatttgctaatgcattcatagtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttatgtgtgcatggaaacatcccagcaaatctcaatgatttgctaatgcattcatagtta 554

                                                                       
Query: 305 taataaaaatcaattttatttaaagttttttccccatgggtgttggttgagtcttgtgcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taataaaaatcaattttatttaaagttttttccccatgggtgttggttgagtcttgtgcg 494

                                                                       
Query: 365 tgtgcatgtgcatttgcgtgtgtgtgactcacttcttacttcagtatgattaaacattcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 tgtgcatgtgcatttgcgtgtgtgtgactcacttcttacttcagtatgattaagcattcc 434

                                                                       
Query: 425 ctctggctcttgttttgtaggcatcatctctcaacacttgacattgtccaagccatttca 484
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 433 ctctggctcttgttttgtaggcatcatctctcaacacttgacgctgtccaagccatttca 374

                                                                       
Query: 485 tatgtctacttgccatgggtcttcttcacagagtagggagttttgaaagtaggagttttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatgtctacttgccatgggtcttcttcacagagtagggagttttgaaagtaggagttttt 314

                                                                       
Query: 545 gctctctactgaatgtcagtgccttgaaaactctgacctacattaaacaaaacaaaacaa 604
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gctctctactgaatgtcagtgtcttgaaaactctgacctacattaaacaaaacaaaacaa 254

                                                                       
Query: 605 aaatcaaagcaaaacaacacctgtatgtggttatagaatttacagataattaagcacaat 664
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaaccaaagcaaaacaacacctgtatgtggttatagaatttacagataattaagcacaat 194

                       
Query: 665 ttaatttttgtt 676
           ||||||||||||
Sbjct: 193 ttaatttttgtt 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)