BAC Information

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BAC

Clone NameMSMg01-537I10
Chromosome2 (Build37)
Map Location 154,855,700 - 154,856,174
singlet/doubletsinglet
Overlap genea
Upstream geneLOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneAhcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537I10.T7 (MSMg01no537_i10.b1)MSMg01-537I10.TJ (MSMg01no537_i10.g1)
ACCAG604478AG604479
length778749
length of high quality
(start - end)		457 (49 - 505)475 (80 - 554)
definitionCHROMAT_FILE: MSMg01no537_i10.b1 PHD_FILE: MSMg01no537_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:55 2005CHROMAT_FILE: MSMg01no537_i10.g1 PHD_FILE: MSMg01no537_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGCCAATCTCCGATACAAAGTGAGACACTGCCTAAAACAA
ACAAAAAGTTGATAATCTTTTTTCTATTTATTAAAAGAAAAAGAGCAAAA
TTGAGCTGGAGAGATGGTTCTATGGTTCAGACCACTTGCTACTCTTGTAA
AGGGTCCAGATTCTCTCCCCAGTACTGCATGGCAGTTTGTGTCTGTAACT
CTAGTTCCAAGAGATCTGATTTCCTCTCCTGGCCTCCATGGGCTCTGTAC
ATACACACACACACACACACACACACACACACTCACACACACACACACAC
ACACACACACACACACACAAACATATACAAGAACGCAAGAGGTATACTTG
TATACATAGGCAAAACATTCCTATGCATATAATAAAAATAAAGAAATCTT
GTTGGAGTTGGCCTGCTGCTGCTGTGTATTGTCTATTGGCAAACTCTGCC
CTAAGATCTGGTTGCCCCAAGACGAGTGATTTCCCAAGCACAAAGCTTGT
GTTGGGCAAACCCTGCTTCCCAAGTTAACTGTCAATATGGAAGAGTAAAG
GAAGGCGGGACCTGAGGGTCAAGTGATGGGGTCACCAGTAAATTCCTTTA
GAAGAATGGGAATAATATATTAGTTGTAAAAGTGTATGAATCTATGAAAA
TGGCGGCTTCCTCTGTAAAGGTTAAGGGTATCTTGTATCCCTTTGGTTTC
TTTGATAAAACAACCCTAGCAATCTTAG

TAGTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAATCAGAAGAGAGTCTG
ACCACGAGGGAACAGAAATAGAAACATGGCTTCTAAAGGTGATAGGTGGG
CAGGCTGAAGGGAATGGAGTATGGGGTGTTAGAGTGGTCATTTCCTCAGC
TCCTACCAGCAATGTATTCCCTGTTCATCAGGAGTGAGTGTCTGGGACCT
GGGAGACAGATTCTGCACTAACAAGCCTGGGTAACTCATCATTCTGTTCT
TTTTGTTGTTGTTTGTTTTTGTTTTGTGTTTTGTTTTGTTTTTTCGAGGC
AGGGTTCCTCTGTATATCCCTAGCTGTCCTGGAACTCACTCTGTAGACCA
GGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGG
GATTAAAGGCGTGTGCCATCATTCTGTTTCTTGAGAAAGGCCACAGTTTC
AAACCTTCTCTGCAGTTTGAACTCAAGAGTCTTGAAGCCAAGCGTGAGCC
TCAGCTGAATCCTAAAACCCCAAACTACCTGAGGACACAGGAGAAAAAAA
TAACCTCAGACTCATTTTCTCCTGTATGCTCACTTCATAATCAACAGAAG
AACTAAGTGACAGAAATCAGTGAGTGGGCCTTCCATGTACCAAGCAAGCT
AACAATTTCTGAAACCAAACTCCCACCCGGGTTGTCTTTTTAACTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_i10.g1 MSMg01no537_i10.g1 CHROMAT_FILE:
MSMg01no537_i10.g1 PHD_FILE: MSMg01no537_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:55 2005
         (475 letters)



>mm_chr2_154855500_154856374
          Length = 875

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaatcagaagagagtctgaccacgagggaacagaaatagaaacatggcttctaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaatcagaagagagtctgaccacgagggaacagaaatagaaacatggcttctaaagg 260

                                                                       
Query: 61  tgataggtgggcaggctgaagggaatggagtatggggtgttagagtggtcatttcctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataggtgggcaggctgaagggaatggagtatggggtgttagagtggtcatttcctcag 320

                                                                       
Query: 121 ctcctaccagcaatgtattccctgttcatcaggagtgagtgtctgggacctgggagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctaccagcaatgtattccctgttcatcaggagtgagtgtctgggacctgggagacag 380

                                                                       
Query: 181 attctgcactaacaagcctgggtaactcatcattctgttctttttgttgttgtttgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctgcactaacaagcctgggtaactcatcattctgttctttttgttgttgtttgtttt 440

                                                                       
Query: 241 tgttttgtgttttgttttgttttttcgaggcagggttcctctgtatatccctagctgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttgtgttttgttttgttttttcgaggcagggttcctctgtatatccctagctgtcc 500

                                                                       
Query: 301 tggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctc 560

                                                                       
Query: 361 ccgagtgctgggattaaaggcgtgtgccatcattctgtttcttgagaaaggccacagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgagtgctgggattaaaggcgtgtgccatcattctgtttcttgagaaaggccacagttt 620

                                                                  
Query: 421 caaaccttctctgcagtttgaactcaagagtcttgaagccaagcgtgagcctcag 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaccttctctgcagtttgaactcaagagtcttgaagccaagcgtgagcctcag 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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