BAC Information

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BAC

Clone NameMSMg01-537O05
Chromosome2 (Build37)
Map Location 120,518,333 - 120,699,741
singlet/doubletdoublet
Overlap geneStard9, Cdan1, Ttbk2, Ubr1
Upstream geneRtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
Downstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O05.T7 (MSMg01no537_o05.b1)MSMg01-537O05.TJ (MSMg01no537_o05.g1)
ACCAG604750AG604751
length750747
length of high quality
(start - end)		564 (71 - 634)629 (75 - 703)
definitionCHROMAT_FILE: MSMg01no537_o05.b1 PHD_FILE: MSMg01no537_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:23 2005CHROMAT_FILE: MSMg01no537_o05.g1 PHD_FILE: MSMg01no537_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,699,178 - 120,699,741)(120,518,333 - 120,518,961)
sequence
GGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTCAATACCTGTGGTCAACTTTTGTCAGGGTTCTCTATAAA
ATAGAATGCTACTCTCCAAGTAATTTCTGTGTGCTGCCACACACAGCAAG
TTCATGTACTTATCCAAAGCTGTCATAAAAAAATAAAGTATTTTCTTTTT
TAGGATTCAGGCAAATCTAAGCAAAGCTTAAATATGCAAGGTATAATACC
AAATGGTAATGAGTCCTGCAAAGTAAAGCTGATCACGGCCAGGGTCAGGA
CTCAAGGACATAGGTAGTCAAGGAAGACTTTTCTCCAAGGAGAATTAAAC
AAAGAGCAGCATAGAAGGAGCTCAGCTGACAGAGAGGTGAAGAGCCTTTC
AATGTAAGGTATTGCTTGGCATAGTAAGAGAACAGTGAAGATTTGATTCC
AGCTGGAAACCTCCTGCGCAGGAAGGTCCAGGAGGTAGCCAGATGTATGC
ATTTTATCTGGGCATTTATGCCACAATAAAGCCTTTGTGAGCTAGGGTCT
AACTCAGTAGAGCACCTCACCAATCCAGTCCCTGGGTTGTATCATCAGCA
AAGTACCACCTGTCTCCACATACTAACCCCAGAAGAAGAGACTTTGTATT
GTATACTAAGTGATAGTCATAGGAGCCATCTGATGGGGTGACTCACATTC
GTTTTATAAAAGATCACTGTGGCTTACTGCCACCCACTGTTTTATGGAGG


GACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCCCTCTCAGAGGGATAGAAGTCT
CCCATCCATTTGTCCTGAGTTTGGTTTGCTTGGGTGACTCTGAGCTTTTT
GTCACAGGAGAGTGCTGGAAGAGCAGTGTGACAGGGACCAGCAGCCATCA
AGACATAGCGAGATCCCTTACAGAGCCCAGCCTGAGCAACAGCAGTGCCA
TGTGGAGGCTCTGAAGCAGCAAGCCAAAGAAGGACAGAGTAGAGTCCAGA
AGGAGCTAGAACTGGACCACACACATATCAGCCAGCAGATAAAAGACAGT
AGGTGCCCTCCTCTAAGGTGTGCTTCGTCTGCCTTTCCCAGCTTCATGCT
GCCAAGCTTCTGCATTCTGACCTTTGTTGTCTTTGTGATATGATGGAATC
TTTTGTCCTGGGCATTCTCTTCCTTCTTTTAGAGACCTGAAGCTCACACA
AGGGGGCTGGAAATAAGCAAGTGGACTTCTCTATGGCCCCTCAGAATGAG
GCATCTTCTGCTGACTCCCTCCAATGGCGCACTTGTCTGTGCATTTCCAC
CCGCCCCACTTGTCCACTGTTACATTGAGGCCTACACGTCTTCCTTTCCT
TTCCCTGCAGTGAGGAGGCCCTGTAGCTTCCTCTTGCCACGCCGCTCTAT
CCAACCTTCTTCACTCCTTACAGCTCTAGCCATGGCTGGAGATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o05.b1 MSMg01no537_o05.b1 CHROMAT_FILE:
MSMg01no537_o05.b1 PHD_FILE: MSMg01no537_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:23 2005
         (564 letters)



>mm_chr2_120698978_120699941
          Length = 964

 Score = 1067 bits (552), Expect = 0.0
 Identities = 561/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtcaacttttgtcagggttctctataaaatagaatgctactctccaagtaatttctgt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tggtcaacctttgtcagggttctctataaaatagaatgctactctccaagtaatttctgt 705

                                                                       
Query: 61  gtgctgccacacacagcaagttcatgtacttatccaaagctgtcataaaaaaataaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gtgctgccacacacagcaagttcatgtacttatccaaagctgtcataaaaaaataaagta 645

                                                                       
Query: 121 ttttcttttttaggattcaggcaaatctaagcaaagcttaaatatgcaaggtataatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttttcttttttaggattcaggcaaatctaagcaaagcttaaatatgcaaggtataatacc 585

                                                                       
Query: 181 aaatggtaatgagtcctgcaaagtaaagctgatcacggccagggtcaggactcaaggaca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 584 aaatggtaatgagtcctgcaaagtaaagctgatcacagccagggtcaggactcaaggaca 525

                                                                       
Query: 241 taggtagtcaaggaagacttttctccaaggagaattaaacaaagagcagcatagaaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taggtagtcaaggaagacttttctccaaggagaattaaacaaagagcagcatagaaggag 465

                                                                       
Query: 301 ctcagctgacagagaggtgaagagcctttcaatgtaaggtattgcttggcatagtaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctcagctgacagagaggtgaagagcctttcaatgtaaggtattgcttggcatagtaagag 405

                                                                       
Query: 361 aacagtgaagatttgattccagctggaaacctcctgcgcaggaaggtccaggaggtagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacagtgaagatttgattccagctggaaacctcctgcgcaggaaggtccaggaggtagcc 345

                                                                       
Query: 421 agatgtatgcattttatctgggcatttatgccacaataaagcctttgtgagctagggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 344 agatgtatgcattttatctgggcatttatgccacaataaagcctttgtgagctagggtcg 285

                                                                       
Query: 481 aactcagtagagcacctcaccaatccagtccctgggttgtatcatcagcaaagtaccacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aactcagtagagcacctcaccaatccagtccctgggttgtatcatcagcaaagtaccacc 225

                                   
Query: 541 tgtctccacatactaaccccagaa 564
           ||||||||||||||||||||||||
Sbjct: 224 tgtctccacatactaaccccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_o05.g1 MSMg01no537_o05.g1 CHROMAT_FILE:
MSMg01no537_o05.g1 PHD_FILE: MSMg01no537_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:23 2005
         (629 letters)



>mm_chr2_120518133_120519161
          Length = 1029

 Score = 1216 bits (629), Expect = 0.0
 Identities = 629/629 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatccctctcagagggatagaagtctcccatccatttgtcctgagtttggtttgcttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatccctctcagagggatagaagtctcccatccatttgtcctgagtttggtttgcttggg 260

                                                                       
Query: 61  tgactctgagctttttgtcacaggagagtgctggaagagcagtgtgacagggaccagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactctgagctttttgtcacaggagagtgctggaagagcagtgtgacagggaccagcag 320

                                                                       
Query: 121 ccatcaagacatagcgagatcccttacagagcccagcctgagcaacagcagtgccatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcaagacatagcgagatcccttacagagcccagcctgagcaacagcagtgccatgtg 380

                                                                       
Query: 181 gaggctctgaagcagcaagccaaagaaggacagagtagagtccagaaggagctagaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctctgaagcagcaagccaaagaaggacagagtagagtccagaaggagctagaactg 440

                                                                       
Query: 241 gaccacacacatatcagccagcagataaaagacagtaggtgccctcctctaaggtgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccacacacatatcagccagcagataaaagacagtaggtgccctcctctaaggtgtgct 500

                                                                       
Query: 301 tcgtctgcctttcccagcttcatgctgccaagcttctgcattctgacctttgttgtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgtctgcctttcccagcttcatgctgccaagcttctgcattctgacctttgttgtcttt 560

                                                                       
Query: 361 gtgatatgatggaatcttttgtcctgggcattctcttccttcttttagagacctgaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgatatgatggaatcttttgtcctgggcattctcttccttcttttagagacctgaagct 620

                                                                       
Query: 421 cacacaagggggctggaaataagcaagtggacttctctatggcccctcagaatgaggcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacacaagggggctggaaataagcaagtggacttctctatggcccctcagaatgaggcat 680

                                                                       
Query: 481 cttctgctgactccctccaatggcgcacttgtctgtgcatttccacccgccccacttgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctgctgactccctccaatggcgcacttgtctgtgcatttccacccgccccacttgtc 740

                                                                       
Query: 541 cactgttacattgaggcctacacgtcttcctttcctttccctgcagtgaggaggccctgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactgttacattgaggcctacacgtcttcctttcctttccctgcagtgaggaggccctgt 800

                                        
Query: 601 agcttcctcttgccacgccgctctatcca 629
           |||||||||||||||||||||||||||||
Sbjct: 801 agcttcctcttgccacgccgctctatcca 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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