Query= MSMg01no537_o07.b1 MSMg01no537_o07.b1 CHROMAT_FILE:
MSMg01no537_o07.b1 PHD_FILE: MSMg01no537_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:23 2005
(558 letters)
>mm_chr2_140585432_140586390
Length = 959
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctttacttacgctcaatagagatatggctagggagtggcctgtcacctgcata 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttacaaaggctcaatagagatatggctagggagtggcctgtcacctgcata 263
Query: 64 ctttctatctgcattcctgctcccagctgaggcctgtttgttcccctctatcagctgcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttctatctgcattcctgctcccagctgaggcctgtttgttcccctctatcagctgcta 323
Query: 124 acctttcctctggttctcattaaccccaaatttatacaaagcatcaacctgttttactct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctttcctctggttctcattaaccccaaatttatacaaagcatcaacctgttttactct 383
Query: 184 tcctgagta-gattaacagttaaagtagaataagctagaagaaccatttgcaattagcac 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctgagtaagattaacagttaaagtagaataagctagaagaaccatttgcaattagcac 443
Query: 243 caaagtctcaaaggtctggcatctctttctatagttaactcccctgtatcagaggctgct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagtctcaaaggtctggcatctctttctatagttaactcccctgtatcagaggctgct 503
Query: 303 tctttttctattggcccctgagatccatctcattttatttttcattgagtttggtgctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctttttctattggcccctgagatccatctcattttatttttcattgagtttggtgctct 563
Query: 363 tgctagcagagccatcctgtatagttgctcagctacacagcgcagtgtgcatggcgggta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgctagcagagccatcctgtatagttgctcagctacacagcgcagtgtgcatggcgggta 623
Query: 423 ggtggaaaactggaggtttgtgtttgtcggtggctcaactggcacagaccgtggatgtgt 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 ggtggaaaactggaggtttgtgtttgtcggtggctcaactggcacagactgtggatgtgt 683
Query: 483 ggtgagaaaagacattttctataggagattttataactcagcaactgtgctttctttcaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtgagaaaagacattttctataggagattttataactcagcaactgtgctttctttcaa 743
Query: 543 accctgaaaacttaga 558
||||||||||||||||
Sbjct: 744 accctgaaaacttaga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_o07.g1 MSMg01no537_o07.g1 CHROMAT_FILE:
MSMg01no537_o07.g1 PHD_FILE: MSMg01no537_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:23 2005
(554 letters)
>mm_chr2_140714362_140715315
Length = 954
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%)
Strand = Plus / Minus
Query: 1 ttcccccattgaggcttacagccatctaatgcacagttacaagtggaggtggccgatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttcccccattgaggcttacagccatctaatgcacagttacaagtggaggtggccgatttc 695
Query: 61 acattcctacattgtagtggaagcaacacttaatgcttataactgtaataatccactatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acattcctacattgtagtggaagcaacacttaatgcttataactgtaataatccactatc 635
Query: 121 attatttaaataaatattggaaagttactaagggaattattcactcaaatactaacttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attatttaaataaatattggaaagttactaagggaattattcactcaaatactaacttaa 575
Query: 181 ttcatatcatacagttcttcactggattaaagaaccaaatctataatgtttttctattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcatatcatacagttcttcactggattaaagaaccaaatctataatgtttttctattaa 515
Query: 241 tagcaggacaatcaaaacttaattttcataatttctataataatttatacagtgaaactg 300
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 514 tagcaggacaatcaaaacttaattttcatattttctacaataatttatacagtgaaactg 455
Query: 301 aacacaaagataggcaaagcattgtgagacttgtatggataccacatactactaaattac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacacaaagataggcaaagcattgtgagacttgtatggataccacatactactaaattac 395
Query: 361 ttattcaaaagtattaatagtttgaatgtgcaaaagaaaaaaatatttccctaccaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttattcaaaagtattaatagtttgaatgtgcaaaagaaaaaaatatttccctaccaaatc 335
Query: 421 ttaatatctcctgaatcaaaatacagtgtgacagtaagtaggagcctttgaaagagtgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttaatatctcctgaatcaaaatacagtgtgacagtaagtaggagcctttgaaagagtgat 275
Query: 481 gtaattagatatttctcatgaggctgggctgtagtatagagagcccttgccacgtgcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtaattagatatttctcatgaggctgggctgtagtatagagagcccttgccacgtgcatg 215
Query: 541 gttcatcccttcag 554
||||||||||||||
Sbjct: 214 gttcatcccttcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
