Query= MSMg01no538_g06.b1 MSMg01no538_g06.b1 CHROMAT_FILE:
MSMg01no538_g06.b1 PHD_FILE: MSMg01no538_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
(714 letters)
>mm_chr2_13387912_13389024
Length = 1113
Score = 1176 bits (608), Expect = 0.0
Identities = 681/722 (94%), Gaps = 28/722 (3%)
Strand = Plus / Plus
Query: 5 gaattcactagttctaaatggaaggaaggaaattcacacaacagacccagtgggaaactt 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcactagaactaaatggaaggaaggaaattcacacaacagacccagtgggaaactt 252
Query: 65 ttttggaatttattcacaatagaataaattatgtaatgaccaagctacaactggttgtcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttttggaatttattcacaatagaataaattatgtaatgaccaagctacaactggttgtcc 312
Query: 125 ttctttacgggaaataatatttttt------------gactcttgcacaatgtcttctat 172
||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 313 ttctttacgggaaataatattttttattattatagaggactcttgcacaatgtcctctat 372
Query: 173 aacattagtttgctgggaaaagttaagatgtcaagggaaaaatattttaacgattttccc 232
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct: 373 aacattagtttgctgggaaaagttaagatttcaagggaaaaa-attttaactattttccc 431
Query: 233 gttgaaattttaactattaaggcctaccactttaagtctgagaattgcttggaaaacaag 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 attgaaattttaactattaaggcctaccactttaagtctgagaattgcttggaaaacaag 491
Query: 293 tactttagaaatctaaaagttcaggaacgatgaaaaaaaattatgggctcagatgttagt 352
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 492 tactttagaaatctaaaagttcaggaacgatgaaaaaaaatcatgggctcagatgttagt 551
Query: 353 tttagttgttcatgtagtgactcagagtcatgaactttggagtcagttgtcttgaggtta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttagttgttcatgtagtgactcagagtcatgaactttggagtcagttgtcttg------ 605
Query: 413 aatttcttaaaaaccatgtgccatttaaaaagcacacatctctggacaaatgtttcaaac 472
||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 606 ---------aaaaccacgtgccatttaaaaagcacgcatatctggacaaatgtttcaaac 656
Query: 473 aatttaggctccatttacacacacattaaaaaataatttttaacttgagtttaaagtata 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatttaggctccatttacacacacattaaaaaataatttttaacttgagtttaaagtata 716
Query: 533 ctgaagtatatgaggcatatggtacctggcacagagtggatactacataggaagccatct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctgaagtatatgaggcatatggtacctggcacagagtggatactacataggaagccatct 776
Query: 593 taatatcagttgcccccacttcatgacaacccactagggtcagtgatcatcttcaaatcc 652
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 777 taatatcagttgcccccacttaatgacaacccactagggtcaatgatcatcttcaaatcc 836
Query: 653 tacatttgcagcatctgcagtaacagcacagtttaacagatttgctacgggcctacagct 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 837 tacatttgcagcatctgcagtaacagcacagtttaacagatttgctacgggcctagagct 896
Query: 713 ag 714
||
Sbjct: 897 ag 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1113
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1103
Effective search space: 776512
Effective search space used: 776512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no538_g06.g1 MSMg01no538_g06.g1 CHROMAT_FILE:
MSMg01no538_g06.g1 PHD_FILE: MSMg01no538_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:02 2005
(650 letters)
>mm_chr2_13522083_13523132
Length = 1050
Score = 625 bits (323), Expect = 0.0
Identities = 332/335 (99%)
Strand = Plus / Minus
Query: 1 aataactcagaaaataacagaaagtatgaagtgtgattgcatgaaattaaaaacctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aataactcagaaaataacagaaagtatgaagtgtgattgcatgaaattaaaaacctgcac 276
Query: 61 aacaacggaaatagcagcgtgaattttccctcataactttgtgtgttttccagaacaaac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aacaacggaaatagcagcgcgaattttccctcataactttgtgtgttttccagaacaaac 216
Query: 121 aagcaaacaaaaccaaacccactgagtccctagtggtgccagcatatttgtggttatgtc 180
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 215 aagcaaacaaaaccaaacccactgagtccctagtgctgcctgcatatttgtggttatgtc 156
Query: 181 catttcttggggcataggagcttctcacttccagaagaaaatggtctatccctttcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 catttcttggggcataggagcttctcacttccagaagaaaatggtctatccctttcccag 96
Query: 241 cagccatagttgccaatagctcttcagaaaggcccttgacctttgccctacccattcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cagccatagttgccaatagctcttcagaaaggcccttgacctttgccctacccattcttg 36
Query: 301 aatttttgtcttacttgatcttgagcatgaagttc 335
|||||||||||||||||||||||||||||||||||
Sbjct: 35 aatttttgtcttacttgatcttgagcatgaagttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
