Query= MSMg01no538_j06.b1 MSMg01no538_j06.b1 CHROMAT_FILE:
MSMg01no538_j06.b1 PHD_FILE: MSMg01no538_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:16 2005
(704 letters)
>mm_chr2_114090199_114091302
Length = 1104
Score = 1087 bits (562), Expect = 0.0
Identities = 683/762 (89%), Gaps = 70/762 (9%)
Strand = Plus / Plus
Query: 5 gaattccatcctcctggctacaggataggaagatgatgtaagctggctcagttggagaga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gaattccatcctcccggctacaggataggaagatgatgtaagctggctcagttggagaga 202
Query: 65 gacagagagagagagagacaga-------a-agagagagacagagagagacacagagaga 116
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 203 gacagagagagagagagagagagagagagacagagagagacagagagagacacagagaga 262
Query: 117 gac--agagagagacagagagac--agagagagacagagac--------agagacagag- 163
||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 263 gacagagagagagacagagagacagagagagagacagagacagagagagagagacagaga 322
Query: 164 -----agagagacacagagagagac--agagagagacagagagagacacacagagagaga 216
||||||| |||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct: 323 gagacagagagagacagagagagacagagagagagacagagagagacagagagagagaga 382
Query: 217 cagagacagagacagagacagagagagacagagagaga--------------cagacaga 262
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 cagagacagagacagagacagagagagacagagagagagagacagagagagacagacaga 442
Query: 263 ga----------tacagagagagacagatacacagagagagacagagacagagagagaca 312
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagagacagagatacagagagagacagatacacagagagagacagagacagagagagaca 502
Query: 313 gagagagacagagagag-c---------gagagagagagaattcttgtgtgtgtttgttg 362
||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 503 gagagagacagagagagacagagagagtgagagagagagaattctggtgtgtgtttgttg 562
Query: 363 aatggttaaggaaatagaactaatcaatgtcaacatcaatgtaagtcttcacagagggac 422
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 563 aatggttaaggaaatagaactaatcaatatcaatatcaatgtaagtcttcacagagggac 622
Query: 423 agaaagacatctatggaaagtatcattcttaagactacagtcgtgcctaaagtacagaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaagacatctatggaaagtatcattcttaagactacagtcgtgcctaaagtacagaac 682
Query: 483 acttctggaaaagtcaattttatttggcaatcagaaagaacatcttcactaatttgtgtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acttctggaaaagtcaattttatttggcaatcagaaagaacatcttcactaatttgtgtt 742
Query: 543 cccatatggcacagcccgactcctttacctatttaagtcaaacccacccttctaggcaaa 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 743 cccatatggcacagcccgactcctttacctatttaagtcaaacccacccttctaggtaaa 802
Query: 603 gcacaaaacttgtctgttgcaatgtagacacctctgtttctgttctgtaggtctgaccat 662
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 803 gcacaaaacttgtctgt--------agacacctctgtttctgttctgtaggtctgaccat 854
Query: 663 taagtctacttagcatccattacgcacttggaaaactcaccg 704
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 taagtctacttagcatccattacgcacttggaaaactcaccg 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 288
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no538_j06.g1 MSMg01no538_j06.g1 CHROMAT_FILE:
MSMg01no538_j06.g1 PHD_FILE: MSMg01no538_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:16 2005
(673 letters)
>mm_chr2_114219622_114220694
Length = 1073
Score = 1069 bits (553), Expect = 0.0
Identities = 573/580 (98%)
Strand = Plus / Minus
Query: 94 cttgaatgctttatctccaggttctttgccaattcctgataattacaatattctcccaaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 cttgaatgctttatctccaggttctttgccaattcctgataattacaatattctcccaaa 1014
Query: 154 gtagacaggatcatcttcccaaaatttggcctaactcttcatcccaagcgctcaaacact 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gtagacaggatcatcttcccaaaatttggcctaactcttcatcccaagcgctcaaacact 954
Query: 214 acttgtcatcaccaatcacggttagcccccacagcctccttttaagcatcccactctggt 273
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 953 acttgtcatcaccaatcacggttagcccccacagcctccttttaagcatcccgctctggt 894
Query: 274 tgccacctcctaatttctttatttcctgtgttgttcacactgaaaatcatcatcactcct 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tgccacctcctaatttctttatttcctgtgttgttcacactgaaaatcatcatcactcct 834
Query: 334 tctgcaaggtcccatactgaggaagactgtctttgctggtaaggaacttattaggtaagt 393
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tctacaaggtcccatactgaggaagactgtctttgctggtaaggaacttattaggtaagt 774
Query: 394 ttttaatgtcctggagagacagcatggcatggggctttgaggaggatttagacccatgtg 453
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 773 ttttaatgtcctggagagacaacatggcatggggctttgaggagggtttagacccatgtg 714
Query: 454 gcaaagtgaaaacccctctaactaggggatgttgtataccatgtagttgatgagtaaacc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gcaaagtgaaaacccctctaactaggggatgttgtataccatgtagttgatgagtaaacc 654
Query: 514 attgtacatgtttatattcatgttgtctctcaatccttgatggtagtggtgggaaggggc 573
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 653 attgtacatgtttatattcatgttgtctctcaatccttgatggtggtggtgggaaggggc 594
Query: 574 aaagtcttgatccctcagtaaagtgtgtccatcacaatggatatggcataggtaggtcct 633
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 593 aaagtcttgatccctcagtaaagtgtgtccaacacaatggatatggcataggtaggtcct 534
Query: 634 gattgcttangacacttgacatgcctcatttggggcactg 673
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 533 gattgcttaggacacttgacatgcctcatttggggcactg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
