BAC Information

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BAC

Clone NameMSMg01-538J11
Chromosome2 (Build37)
Map Location 145,125,181 - 145,281,683
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream geneOvol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538J11.T7 (MSMg01no538_j11.b1)MSMg01-538J11.TJ (MSMg01no538_j11.g1)
ACCAG605283AG605284
length718723
length of high quality
(start - end)		675 (44 - 718)648 (76 - 723)
definitionCHROMAT_FILE: MSMg01no538_j11.b1 PHD_FILE: MSMg01no538_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:16 2005CHROMAT_FILE: MSMg01no538_j11.g1 PHD_FILE: MSMg01no538_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,125,181 - 145,125,850)(145,281,037 - 145,281,683)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTCACTTGTTCTGTGAACTCGAGACCTCTCTGAAAATTAAAGTCT
AGAAATAGGTGAACACAGTAAAGTAGACCTGGAACTTAGTAGTTTTAAGG
GAATGGTTGTGACTCATTAAGTTTTAAAATACACTCAAGGAGATTCTTAG
ATGTGCCCTCAACAGTATGCCCAATACAAAAGATTAAAGGTTAATGTTAT
TGCATCAAAAACCATATGTTTCAAGAGAGGCGTGGCATTGCAGAAGGCCA
TATGCAATCAGAGATCAGTCAATTTAACTCCTATCTCAGACCATCTCTGA
AAGGCAGTATACTTAGTATACCTTTGCGTCCTCAAAGTGAGGGTTTATAA
CCCAGACCTACCCCTTGGGGATATAACTAAGATGAAAGGAGATAGGTCTG
TAAAGTGGTTAGGTAGCAGGGCACTTGGAGCTTTGTCCTCAAACCCTCCT
AGTGCTGAACAGAACATTTCTCTACAATTTAGTCAAGAGGCATGCCATCT
TTGGCTTGCATTCTGTGGTGGGGTTGCCAATCGATGACAGACAGCTCCTC
TGGCAGGTCACAACAAGGTGGTAATTGACCTTGCTTCTCCCAGGACATCT
GTTCAAGTTCTGCTAGAAGCCAAGGACTCCCCAGTGTGGGGTTTTGGTTT
CACATTGTGGCAGTCCAN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTAGGATGTCCAGGGTAACATCT
AGCCATATATGGGTTTTCACATTTATACTAGCTAAAACTAAGTAAAACAG
ACAAAAACCCAGTGCCTCACTCATATTTACTATTCTTTGAGGGCTCAGTA
GCCATGTGTGGCCAGTGGCTAACATAGAGAGGACAGATTTTGCACCAGAG
TTCTGCTGGACAACAAAATGATAGATTTGGGAAAACATGTAAGCTCTGAT
AAGTCCCTTAAAGTGCTAGGGGAACTGGAGGATGAAAAAGGAGATATCTC
TACCACCTGCTACAACCCCAGCTATTCTGCCCCCTGATTACTGGTTGATG
TCATCTCAAAAGCTATCTGGGCCCAGAGGAGCACGTTTCAGGAAACCATC
CTTCAGATACTCAAATAAACAGCAGAAATAACTGAGAGCATCATGTATTT
GGCAAGTCCCATCCAGAGCAAAGTTGTTTCTTTTCCCCCAAAATAAAAGG
GGAAGTATAAGATAGGAATAAGGGTATTCTTGTTGGGACAAGAGTCCCTT
GAGTGGCTCATCCATCTTCTAGCTTCTTCAAGAATGAAGCTCAGTCTATC
TGTTCATTTGATTTGGCAGGAAGCTGAGGGTAGGGTAGGGCTAAAACATC
CTGTTCATCCCCCANGCTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_j11.b1 MSMg01no538_j11.b1 CHROMAT_FILE:
MSMg01no538_j11.b1 PHD_FILE: MSMg01no538_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:16 2005
         (675 letters)



>mm_chr2_145124977_145126051
          Length = 1075

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcacttgttctgtgaactcgagacctctctgaaaattaaagtctagaaata 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcagttgttctgtgaactcgagacctctctgaaaattaaagtctagaaata 264

                                                                       
Query: 65  ggtgaacacagtaaagtagacctggaacttagtagttttaagggaatggttgtgactcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgaacacagtaaagtagacctggaacttagtagttttaagggaatggttgtgactcat 324

                                                                       
Query: 125 taagttttaaaatacactcaaggagattcttagatgtgccctcaacagtatgcccaatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagttttaaaatacactcaaggagattcttagatgtgccctcaacagtatgcccaatac 384

                                                                       
Query: 185 aaaagattaaaggttaatgttattgcatcaaaaaccatatgtttcaagagaggcgtggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagattaaaggttaatgttattgcatcaaaaaccatatgtttcaagagaggcgtggca 444

                                                                       
Query: 245 ttgcagaaggccatatgcaatcagagatcagtcaatttaactcctatctcagaccatctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgcagaaggccatatgcaatcagagatcagtcaatttaactcctatctcagaccatctc 504

                                                                       
Query: 305 tgaaaggcagtatacttagtatacctttgcgtcctcaaagtgagggtttataacccagac 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaaaggcagtatacttagtgtacctttgcgtcctcaaagtgagggtttataacccagac 564

                                                                       
Query: 365 ctaccccttggggatataactaagatgaaaggagataggtctgtaaagtggttaggtagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaccccttggggatataactaagatgaaaggagataggtctgtaaagtggttaggtagc 624

                                                                       
Query: 425 agggcacttggagctttgtcctcaaaccctcctagtgctgaacagaacatttctctacaa 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 agggcacttggagctttgtcctcaacccctcctagtgctgaacagaacatttctctacaa 684

                                                                       
Query: 485 tttagtcaagaggcatgccatctttggcttgcattctgtggtggggttgccaatcgatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttagtcaagaggcatgccatctttggcttgcattctgtggtggggttgccaatcgatga 744

                                                                       
Query: 545 cagacagctcctctggcaggtcacaacaaggtggtaattgaccttgcttctcccaggaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagacagctcctctggcaggtcacaacaaggtggtaattgaccttgcttctcccaggaca 804

                                                                       
Query: 605 tctgttcaagttctgctagaagccaaggactccccagtgtggggttttggtttcacattg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctgttcaagttctgctagaagccaaggactccccagtgtggggttttggtttcacattg 864

                     
Query: 665 tggcagtcca 674
           ||||||||||
Sbjct: 865 tggcagtcca 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_j11.g1 MSMg01no538_j11.g1 CHROMAT_FILE:
MSMg01no538_j11.g1 PHD_FILE: MSMg01no538_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:17 2005
         (648 letters)



>mm_chr2_145280674_145281721
          Length = 1048

 Score = 1129 bits (584), Expect = 0.0
 Identities = 631/647 (97%)
 Strand = Plus / Minus

                                                                        
Query: 2    cttaggatgtccagggtaacatctagccatatatgggttttcacatttatactagctaaa 61
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1010 cttaggatgtccagggtaacatctaaccatatatgggttttcacatttatactagctaaa 951

                                                                        
Query: 62   actaagtaaaacagacaaaaacccagtgcctcactcatatttactattctttgagggctc 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 950  actaagtaaaacagacaaaaacccagtgcctcactcatatttactattcttcgagggctc 891

                                                                        
Query: 122  agtagccatgtgtggccagtggctaacatagagaggacagattttgcaccagagttctgc 181
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 890  agtagccatgtgtggccaggggctaacatagagagcacagattttgcaccagagttctgc 831

                                                                        
Query: 182  tggacaacaaaatgatagatttgggaaaacatgtaagctctgataagtcccttaaagtgc 241
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 830  tggacaacaaaatgatagatttgggaaaacatgtgagctctgataagtcccttaaagtgc 771

                                                                        
Query: 242  taggggaactggaggatgaaaaaggagatatctctaccacctgctacaaccccagctatt 301
            |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  taggggaactagaggattaaaaaggagatatctctaccacctgctacaaccccagctatt 711

                                                                        
Query: 302  ctgccccctgattactggttgatgtcatctcaaaagctatctgggcccagaggagcacgt 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ctgccccctgattactggttgatgtcatctcaaaagctatctgggcccagaggagcacgt 651

                                                                        
Query: 362  ttcaggaaaccatccttcagatactcaaataaacagcagaaataactgagagcatcatgt 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  ttcaggaaaccatccttcagatactcaaataaacagcagaaataactgagagcatcatgt 591

                                                                        
Query: 422  atttggcaagtcccatccagagcaaagttgtttcttttcccccaaaataaaaggggaagt 481
            ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 590  atttggcaagtgccatccagagcaaagttgtttcctttcccccaaaacaaaaggggaagt 531

                                                                        
Query: 482  ataagataggaataagggtattcttgttgggacaagagtcccttgagtggctcatccatc 541
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 530  ataagataggaataaggctattcttgttgggacaagagtcccttgagtggctcctccatc 471

                                                                        
Query: 542  ttctagcttcttcaagaatgaagctcagtctatctgttcatttgatttggcaggaagctg 601
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  ttccagcttcttcaagaatgaagctcagtctatctgttcatttgatttggcaggaagctg 411

                                                           
Query: 602  agggtagggtagggctaaaacatcctgttcatcccccangcttctgg 648
            |||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 410  agggtagggtagggctaaaacatcctcttcatctcccaggcttctgg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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