Query= MSMg01no538_k06.b1 MSMg01no538_k06.b1 CHROMAT_FILE:
MSMg01no538_k06.b1 PHD_FILE: MSMg01no538_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(694 letters)
>mm_chr2_109343628_109344724
Length = 1097
Score = 1255 bits (649), Expect = 0.0
Identities = 681/693 (98%), Gaps = 3/693 (0%)
Strand = Plus / Plus
Query: 5 gaattctctaaatgtagcttcttaatggcaaattcctcccaccaacatagaggcttatgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaatgtagcttcttaatggcaaattcctcccaccaacatagaggcttatgc 264
Query: 65 ttagttttctagatatagtctatattagttatatgtggtaatcaattattccaaatctta 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ttagttttctagatatagtctatattagttatatatggtaatcaattattccaaatctta 324
Query: 125 gtggttttaagagtataccaaaaatgtatcatctctgatagtggccatgatttggaaatt 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggttttaagagtataccaaaaatttatcatctctgatagtggccatgatttggaaatt 384
Query: 185 gagatgctgagtgactggatgggacttaaaagctattcattgggaaacatcaatcaagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagatgctgagtgactggatgggacttaaaagctattcattgggaaacatcaatcaagac 444
Query: 245 gtaggctgtagtcatctgcatgcgtgactacgtgtacatatctaagatggaatcttcata 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaggctgtagtcatctgcatgcctgactacgtgtacatatctaagatggaatcttcata 504
Query: 305 gctgttgtcctaactcctctgtacagaggcctctccacaggagtgctttgagtgtccttc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgttgtcctaactcctctgtacacaggcctctccacaggagtgctttgagtgtccttc 564
Query: 365 aaaattacagctcacttcctgagaacagattattcaagcaacccagtgggaagcatgata 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 aaaattacagctcacttcctgagaacaaattattcaagcaacccagtgggaagcatgata 624
Query: 425 cttttactaccaagccttgtaagtcacaccttctatcgcagatcatatcaggttcagtgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttttactaccaagccttgtaagtcacaccttctatcgcagatcatatcaggttcagtgt 684
Query: 485 ggaaagagattttataggctatgtctgtcaacagataaagacttctggggatcatcatag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaaagagattttataggctatgtctgtcaacagataaagacttctggggatcatcatag 744
Query: 545 agaaggttcataaagaccaggccagagatgagaaacagaggcagatggccataaaat--- 601
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 agaaggttcataaagtccaggccagagatgagaaacagaagcagatggccataaaattat 804
Query: 602 aagactcgagaaatatatctagccttttctgtaagctctgaacatctccacatgtctatt 661
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagagttgagaaatatatctagccttttctgtaagctctgaacatctccacatgtctatt 864
Query: 662 catccttcaaagatcacatccaagtgtctaacc 694
|||||||||||||||||||||||||||||||||
Sbjct: 865 catccttcaaagatcacatccaagtgtctaacc 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1097
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1087
Effective search space: 743508
Effective search space used: 743508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k06.g1 MSMg01no538_k06.g1 CHROMAT_FILE:
MSMg01no538_k06.g1 PHD_FILE: MSMg01no538_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(552 letters)
>mm_chr2_109496259_109497211
Length = 953
Score = 781 bits (404), Expect = 0.0
Identities = 417/424 (98%), Gaps = 6/424 (1%)
Strand = Plus / Minus
Query: 130 ttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttc 882
Query: 190 ttttcttttcttttcttttcaaggcaggatttgtctgtgtagccctggtcatcttagaac 249
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 881 ttttcttttcttttctt-----ggcaggatttgtctgtgtagccctggccatcttagaac 827
Query: 250 tcattctgtagaacaggcttgtctcaaagtcagagatctgcctgcctctgtgtcctacaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcattctgtagaacaggcttgtctcaaagtcagagatctgcctgcctctgtgtcctacaa 767
Query: 310 gctgaaattgaggattgttgctattctttaatagatcgcaaatagagtccttctcctatt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gctgaaattgaggattgttgctattctttaatagatcgcaaatagagtccttctcctatt 707
Query: 370 ctgctgtccccttgtgcttgaattgaactctagagaactttgtgtctcattcacttactt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctgctgtccccttgtgcttgaattgaactctagagaactttgtgtctcattcacttactt 647
Query: 430 ttctaggtctttgattaaatgtcacattgacagccttaagctgtgcacctcatcattact 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttctaggtctttgattaaatgtcacattgacagccttaagctgtgcacctcatcattact 587
Query: 490 gctttgtgtcctcttgccctggaatttcctgtgatgctcttcattttca-tttttttcta 548
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 586 gctttgtgtcctcttgccctggaatttcctgtgatgctcttcattttcattttttttcta 527
Query: 549 gtgt 552
||||
Sbjct: 526 gtgt 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
