Query= MSMg01no538_k18.b1 MSMg01no538_k18.b1 CHROMAT_FILE:
MSMg01no538_k18.b1 PHD_FILE: MSMg01no538_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:22 2005
(564 letters)
>mm_chr2_153231325_153232289
Length = 965
Score = 1064 bits (550), Expect = 0.0
Identities = 559/562 (99%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattatatagatcaggctagccgtaaactcgagattcctctgtcttctgaatgc 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattatatagatcaggctagccgtgaactcgagattcctctgtcttctgaatgc 263
Query: 64 tggcagggattgaaggcatgccctgcctagtggtaatttttttttaacactgtttgatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcagggattgaaggcatgccctgcctagtggtaatttttttttaacactgtttgatat 323
Query: 124 atcccaggtttgatcctgcctctgctgctttccaggtgctaggcatgaatctggtttttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcccaggtttgatcctgcctctgctgctttccaggtgctaggcatgaatctggtttttg 383
Query: 184 tgtggtactggggaattcaacccaaggctttgcacatgctaagctagccctata-gtgag 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 tgtggtactggggaattcaacccaaggctttgcacatgctaagctagccctataagtgag 443
Query: 243 tcacatcttatgcctctagggcatttcaaatgatttaaaaggacaagagatgtgttttcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacatcttatgcctctagggcatttcaaatgatttaaaaggacaagagatgtgttttcc 503
Query: 303 ctactggataaaggggaggtttgccagttactgttgagtgaacttgtcagtgctttaaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctactggataaaggggaggtttgccagttactgttgagtgaacttgtcagtgctttaaga 563
Query: 363 tgacatttcccagttgatggtgtcttgtgtcaactgttaacagcaatggtctgaaagcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacatttcccagttgatggtgtcttgtgtcaactgttaacagcaatggtctgaaagcat 623
Query: 423 cattttaagcaagagtatccagtattctgtcctccagccggttccctgggattccagtgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cattttaagcaagagtatccagtattctgtcctccagccggttccctgggattccagtgt 683
Query: 483 tccgtagcagcctcactgaagaggtaagtgttcacacaatcctgttctgtgaaggttgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccgtagcagcctcactgaagaggtaagtgttcacacaatcctgttctgtgaaggttgtg 743
Query: 543 gggcgcttgtggtcccttggag 564
|||| |||||||||||||||||
Sbjct: 744 gggcacttgtggtcccttggag 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space: 529070
Effective search space used: 529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k18.g1 MSMg01no538_k18.g1 CHROMAT_FILE:
MSMg01no538_k18.g1 PHD_FILE: MSMg01no538_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:23 2005
(522 letters)
>mm_chr2_153360400_153361321
Length = 922
Score = 779 bits (403), Expect = 0.0
Identities = 412/417 (98%), Gaps = 4/417 (0%)
Strand = Plus / Minus
Query: 106 gtgaagacttccgtctactgaaggccctcgagtttaaaatctcagtcttggcatgtagct 165
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 921 gtgaagacttccgtctactgaaggccctcgagtttaaaatctcagtctgggcatgtagct 862
Query: 166 tagtaagcagagaattcctaagccacacacacctatactcctagtacttgaaaatggagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tagtaagcagagaattcctaagccacacacacctatactcctagtacttgaaaatggagt 802
Query: 226 cagaaagaagttcaaggtcatactcagatacatagtatgaggccagctagagacacttga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagaaagaagttcaaggtcatactcagatacatagtatgaggccagctagagacacttga 742
Query: 286 gactttatgtcaaaaaaaaaaaaaaaaaaaaagccagcttagtgccacagaggctgagca 345
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gactttatgtc----aaaaaaaaaaaaaaaaagccagcttagtgccacagaggctgagca 686
Query: 346 gtatccggctcactgactactgatttcccacactgaatagctgtctgacacagaagatgc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtatccggctcactgactactgatttcccacactgaatagctgtctgacacagaagatgc 626
Query: 406 tggagcaaatgtccaaatgaatggttggtggacataataatagccagagctagcactgag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggagcaaatgtccaaatgaatggttggtggacataataatagccagagctagcactgag 566
Query: 466 caattgctcatttgcacacagccccgagagggggagggggctatcatcagtatcccc 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caattgctcatttgcacacagccccgagagggggagggggctatcatcagtatcccc 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
