Query= MSMg01no538_l02.b1 MSMg01no538_l02.b1 CHROMAT_FILE:
MSMg01no538_l02.b1 PHD_FILE: MSMg01no538_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:24 2005
(629 letters)
>mm_chr2_58378297_58379325
Length = 1029
Score = 1027 bits (531), Expect = 0.0
Identities = 592/627 (94%), Gaps = 25/627 (3%)
Strand = Plus / Minus
Query: 5 gaattcctaatttacattagtcattctgccacctttgggaattgggttattgatggtaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gaattcctaatttacattagtcattctgccacctttgggaattgggttattgatggtaaa 908
Query: 65 tatagatcgttcctatcaattgtcaggtaagatgcgtcttcagagactcgacattgcaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tatagatcgttcctatcaattgtcaggtaagatgcgtcttcagagactcgacattgcaaa 848
Query: 125 tggccagaaagccagagcttcagctggtgctgatgtaaatcaagcacaggtgttgttgta 184
||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 847 tggccagaaagccagagcttcagctcgtgctgatgtaaa----------------tt--- 807
Query: 185 aatcaagcacaggtgtggaagctgggagcttgtgatgaagagtgtgaatgtcgccaatag 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 806 ----aagcacaggtgtggaagctggaagcttgtgatgaagagtgtgaatgtcgccaatag 751
Query: 245 caggcatatttcattttttaagatgaatctatcaaaatgatgcagggtgcaaaactaccc 304
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 750 caggcatatttcatttttaaagatgaatctatcaaaatgaggcagggtgcaaaactaccc 691
Query: 305 taattaataataaccccaaatcaagagtctgtcatactgttagtggactgaatgcttaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 taattaataataaccccaaatcaagagtctgtcatactgttagtggactgaatgcttaat 631
Query: 365 ggcatgaaattaaagtgtggaaaaaaaatctgtgctttgtggttactgatataaaattgc 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 630 ggcatgaaattaaagtgtggaaaaaacatctgtgctttgtggttactgatataaaattgc 571
Query: 425 ttgtgatatgaaagctgggtattcaagtagcaaagataatgtagtcttggtaatagcatg 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttgtgatatggaagctgggtattcaagtagcaaagataatgtagtcttggtaatagcatg 511
Query: 485 tattatggaaataggcctatctctagcctttcacccaaattacttcctctttgaagtatc 544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 510 tattatggaaataggcctatctctagcctttcgcccaaattacttcctctttgaagtatc 451
Query: 545 attggaactttacagcacctcctgaggggtttctcccaactctggtagatgagctacagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 attggaactttacagcacctcctgaggggtttctcccaactctggtagatgagctacagc 391
Query: 605 ccaccccccc--atcccttcttttagt 629
|| ||||||| || |||| |||||||
Sbjct: 390 ccccccccccccattcctttttttagt 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_l02.g1 MSMg01no538_l02.g1 CHROMAT_FILE:
MSMg01no538_l02.g1 PHD_FILE: MSMg01no538_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:24 2005
(626 letters)
>mm_chr2_58205500_58206525
Length = 1026
Score = 1183 bits (612), Expect = 0.0
Identities = 618/620 (99%)
Strand = Plus / Plus
Query: 1 cccctaaaatagagaaaacacaaaatattactcaaaaggaaaaaaaccctcaaatggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccctaaaatagagaaaacacaaaatattactcaaaaggaaaaaaaccctcaaatggcat 260
Query: 61 tgataaataacaatcactttcaaaagactacagatttgagtgaaaacaactgtttcgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataaataacaatcactttcaaaagactacagatttgagtgaaaacaactgtttcgatt 320
Query: 121 caacagtcacttccagggttcccagagaattatatttttctcctctgcctaggttcttac 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacagtcacttccagggttcctagagaattatatttttctcctctgcctaggttcttac 380
Query: 181 gttgagatattcaaaatcagattcaaaaaggctagaactgcttctggccacacaggagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgagatattcaaaatcagattcaaaaaggctagaactgcttctggccacacaggagca 440
Query: 241 ggggaacttcttgttcaaagagctcacagtgacctatcctgagatgcaacctgggacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggaacttcttgttcaaagagctcacagtgacctatcctgagatgcaacctgggacaga 500
Query: 301 ggcagagccagaacaaaagttctaagagacctgacacagaaataggtctgttctgttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagagccagaacaaaagttctaagagacctgacacagaaataggtctgttctgttctt 560
Query: 361 tcaataaaaagagccaggaacatgtgcagcaagaatttatattatcacagtatttctttc 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tcaataaaaagagccaggaacatgtgcagcaagaattcatattatcacagtatttctttc 620
Query: 421 ttgtgagctgcaagctaaagacagagagttcccatctaactgaaatttacacacacacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtgagctgcaagctaaagacagagagttcccatctaactgaaatttacacacacacat 680
Query: 481 aatattttgtttgtttattttcaagacagggtttctccatgtagccctggctgttctgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatattttgtttgtttattttcaagacagggtttctccatgtagccctggctgttctgga 740
Query: 541 actcactctgtagactgggctggccttgaactcatagatctgcctgcctctgcatcccaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actcactctgtagactgggctggccttgaactcatagatctgcctgcctctgcatcccaa 800
Query: 601 gtgctgggattaaaggtgtg 620
||||||||||||||||||||
Sbjct: 801 gtgctgggattaaaggtgtg 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
