Query= MSMg01no539_a21.b1 MSMg01no539_a21.b1 CHROMAT_FILE:
MSMg01no539_a21.b1 PHD_FILE: MSMg01no539_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:52 2005
(601 letters)
>mm_chr2_171684228_171685228
Length = 1001
Score = 1154 bits (597), Expect = 0.0
Identities = 600/601 (99%)
Strand = Plus / Plus
Query: 1 ccatgaggacacacaaccacagccagcttcattcttcattcttgtctctcagaggacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgaggacacacaaccacagccagcttcattcttcattcttgtctctcagaggacttt 260
Query: 61 tgatgtatgtctttgatatggccattcttaatgtttgctttagagtcaagcattcccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgtatgtctttgatatggccattcttaatgtttgctttagagtcaagcattcccatg 320
Query: 121 ggagcactccaagagtccttagaatttttgttcacaggggactcatgacttttccccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcactccaagagtccttagaatttttgttcacaggggactcatgacttttccccttg 380
Query: 181 tttttaataacgaaatgatggtttgtcctcctctgactgttttctttctatgggtaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaataacgaaatgatggtttgtcctcctctgactgttttctttctatgggtaccca 440
Query: 241 acgttctctgaaataatcaagtacaaatagctcttcaaattctctagtacctcctttgaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgttctcagaaataatcaagtacaaatagctcttcaaattctctagtacctcctttgaa 500
Query: 301 agtcctcaggcggctcttccaagaaatacttacaaataaagagatgccagttgcgtcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcctcaggcggctcttccaagaaatacttacaaataaagagatgccagttgcgtcccc 560
Query: 361 tgggtcactaagccacccaatctctgcagaagtctttggaatttctgtcagctcttgcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggtcactaagccacccaatctctgcagaagtctttggaatttctgtcagctcttgcaa 620
Query: 421 gttactcagaggactctaatgaatatttgaagaggcgaaagttttagtgaatttttttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttactcagaggactctaatgaatatttgaagaggcgaaagttttagtgaatttttttct 680
Query: 481 tgtcctttttgggaaacaaagagagtattccttctgccatgagattatttcgttccattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtcctttttgggaaacaaagagagtattccttctgccatgagattatttcgttccattc 740
Query: 541 tttattcctcttacaagggatgaacatactccccagcaaagcatcagtgggaaactctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttattcctcttacaagggatgaacatactccccagcaaagcatcagtgggaaactctca 800
Query: 601 a 601
|
Sbjct: 801 a 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_a21.g1 MSMg01no539_a21.g1 CHROMAT_FILE:
MSMg01no539_a21.g1 PHD_FILE: MSMg01no539_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:52 2005
(490 letters)
>mm_chr2_171896962_171897851
Length = 890
Score = 422 bits (218), Expect = e-122
Identities = 307/384 (79%), Gaps = 76/384 (19%)
Strand = Plus / Minus
Query: 1 ctcagaggtggagacagaagaacggaagccaaaaaagggctagcagaagatagggaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctcagaggtggagacagaagaacggaagccaaaaaagggctagcagaagatagggaattc 249
Query: 61 tttttatccttcttgtcttccctgttttccccaactctctggcctgcctctctgtctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttttatccttcttgtcttccctgttttccccaactctctggcctgcc------------ 201
Query: 121 tctctgtctctgtctctgtctctgtctctgtctctgtctctgtctctgtctctgtctctg 180
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ------------------tctctgtctctgtctctgtctctgtctctgtctctgtctctg 159
Query: 181 tctgtctgtctctgtctgtctctgtctgtctctgcctctgtctgtctctctgtgtgtctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 158 tctgtctgtctctgtctgtctctgtctgtctctgcctctgtctgtctctc--tgtgtctg 101
Query: 241 tctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctctctctctc 300
||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 100 ----------tgtctgtgtgtctgtctgtctgtctgtctctctctctctctct------- 58
Query: 301 tctctctctctctctctctctctctctctctccctctctccgattagctttcactgcata 360
| ||||||||||||||||||||||||||||||||
Sbjct: 57 --------------------------t-tctccctctctccgattagctttcactgcata 25
Query: 361 gccatgactggtctagaacttgct 384
||||||||||||||||||||||||
Sbjct: 24 gccatgactggtctagaacttgct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
