BAC Information

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BAC

Clone NameMSMg01-539D01
Chromosome2 (Build37)
Map Location 110,794,693 - 110,795,319
singlet/doubletsinglet
Overlap geneLOC668802
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539D01.T7 (MSMg01no539_d01.b1)MSMg01-539D01.TJ (MSMg01no539_d01.g1)
ACCAG605741AG605742
length735824
length of high quality
(start - end)
627 (52 - 678)46 (83 - 128)
definitionCHROMAT_FILE: MSMg01no539_d01.b1 PHD_FILE: MSMg01no539_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005CHROMAT_FILE: MSMg01no539_d01.g1 PHD_FILE: MSMg01no539_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATATGTCTAAATTGCGGGCGCTAAACGACTCACTTTCAGAAGAGGAT
NCGCGGAATTCTCTCTTTCCGAGATACTAAAGAGAAAGATAGTGTCCTTC
AGAGCAAATTGAGTAAACTATCTCTTTCTTCATAGACCAACCAATGTAGT
TCCTTTTCCATAAGCTTCGTGGATGCTTGTAAAAATAAAAATAAAAATAA
ATGATTTTTTAAACCATAAAACCATTTCAGAAATGTATTTATTTAGTGAC
ACTATTTACTGATTCTTTAAGCAAAGACAAATGTCATATATATATATATA
TATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCAATAAAATG
TTATTCTTATTTCCGTCCATATTTTATTAGAGACACAATTCAAACCTTTG
AAAGAATCTTTACAAGCATAACAGGAAGGATAAAGTGTGATTTAACAGTC
ACGTCTTCCAAAGCCTGCTGTCCTGGATTTATTTATAACATTGGAATAAA
TCAAGTCAGCTCTTTGGTCTCCCTTCTTCTTGAGTTCCTTGTGGTTTGTG
AATTGCATCTTGGGTGTTCCGAGATTCTGGGCTAATATCCACTTATCAGT
GAGTGCATATCATGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAGGAT
GATATCTTCCAGATCCATCCATTTGCCTAAGAATTTCATAATTTAATTGT
TTTTAATAGCTGAGTAGTACTCCATTGTTGTAATG
CGTTTGCCATGCTGGGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTAACTCTGTACCCCA
TTTGTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTAC
TATTTCGGGCTATTTGGGCCCCTCCCCGCCGCCGCCCTCCGCCCCCGCGG
CCCCCCCCCCTCCCGCGCCGCCCCGCCCCCCCCCCCCCCCTCCGCCCGCC
TCCCGCCCCCCCCCCCCGCCCCGGCCCGCCCCCTCTCGCCGCCCGCCCGC
GCCCCCCCCGCCCCTCCCCCCCCGCCCCCTTCCCCCCCCTCCCCCCCCTC
CGCCCCCCCCCCCGGCGCGGTTCCTGCCTTCCCTCCCCCCCTCCCCCGGC
CCGCCCGCCCCCGCCCCCCCGGCCCCCCCGCCGCCGCGCCGCCCCCCGCC
CCCCTCCCCGCCCCGCTCCCCCGCCCCCCCGCTCCCTTCCCCGCGCCTCG
CCCCCCCTCCCCCCCCCCCCCGTTCCCGCCCGCCCCCCCGCGCCCCGCTC
CTGTCCCCCCCGCCTCCCTCTTCTCCCCGCCCGCCCTTTCTCTCCCCCCC
CGCCTCCGGCGCGTTTCCTCTCCCCTCCCCGCCCCCCCCTTGTCCCCCCC
GTCCCTTCCGTACGCCCCTCCCCCCCCCCCTCCCCCCCGCCTTCTGCCCC
CCCGCCGCCGGCGCCCCCCCCCTCCCCCTCTCCCCCCCGGGCCCCTCCTC
CCGCCCTTCCCCGTGCCCCCCGCGCTCCCCTCCCCCCTCCCTCCTCCCCC
GCCTCTCCCCGGTCGTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_d01.b1 MSMg01no539_d01.b1 CHROMAT_FILE:
MSMg01no539_d01.b1 PHD_FILE: MSMg01no539_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:03 2005
         (627 letters)



>mm_chr2_110794494_110795520
          Length = 1027

 Score =  922 bits (477), Expect = 0.0
 Identities = 585/649 (90%), Gaps = 49/649 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctttcc---gagatactaaagagaaagatagtgtccttcagagcaaattga 61
           ||||||||||   ||   ||||||||||||||||||||||||||||||||||||||||  
Sbjct: 200 gaattctctc---cctaggagatactaaagagaaagatagtgtccttcagagcaaatt-- 254

                                                                       
Query: 62  gtaaactatctctttcttcatagaccaaccaatgtagttccttttccataagcttcgtgg 121
                     |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 ----------tctttcttcatagaccaaccaatgtagttccttttccataggcttcgtgg 304

                                                                       
Query: 122 atgcttgtaaaaataaaaataaaaataaatgattttttaaaccataaaaccatttcagaa 181
           |||||||      ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 305 atgcttg------taaaaataaaaataaatga-tttttaaaccataaaaccatttcagaa 357

                                                                       
Query: 182 atgtatttatttagtgacactatttactgattctttaagcaaagacaa------------ 229
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 358 atgtatttatttagtgacactatttactgattctttaagcaaagacaaattatatatata 417

                                                                       
Query: 230 -----------atgt-catatatatatatatatatatagagagagagagagagagagaga 277
                      ||||  ||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 418 tatatatatatatgtatatatatatatatatatatatatatagagagagagagagagaga 477

                                                                       
Query: 278 gagagagagaaccaataaaatgttattcttatttccgtccatattttattagagacacaa 337
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 gagagagagaaccaataaaatgttattcttatttccctccatattttattagagacacaa 537

                                                                       
Query: 338 ttcaaacctttgaaagaatctttacaagcataacaggaaggataaagtgtgatttaacag 397
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 538 ttcaaacctttgaaagaatctttacaagcataacaggaaggataaagtgtaatttaacaa 597

                                                                       
Query: 398 tcacgtcttccaaagcctgctgtcctggatttatttataacattggaataaatcaagtca 457
           |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||
Sbjct: 598 tcacgtcttccaaagcctgctgtcctggatttaggtatagcattggaataaatcaagtca 657

                                                                       
Query: 458 gctctttggtctcccttcttcttgagttccttgtggtttgtgaattgcatcttgggtgtt 517
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||
Sbjct: 658 gctctttggtctcccttcttcttgagtttcatgtggtttgtgaattgcatcttggatatt 717

                                                                       
Query: 518 ccgagattctgggctaatatccacttatcagtgagtgcatatcatgtgagttcttttgtg 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccgagattctgggctaatatccacttatcagtgagtgcatatcatgtgagttcttttgtg 777

                                                            
Query: 578 attgggttacctcactcaggatgatatcttccagatccatccatttgcc 626
           ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 778 attgggttacctcactcaggatgatgtcttccagatccatccatttgcc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)