MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-539E16
Chromosome	2 (Build37)
Map Location	14,683,542 - 14,683,729
singlet/doublet	singlet
Overlap gene	Cacnb2
Upstream gene	St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream gene	LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Link	Open Mouse BAC browser

Click to get alignment info.

name	St8sia6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241230 MGI:2386797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpla (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30963 MGI:1353592
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Stam (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20844 MGI:1329014
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010003H20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625286 MGI:1919309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17533 MGI:97142
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc39a12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:277468 MGI:2139274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacnb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12296 MGI:894644
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041164 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 352 ESTs, 5 Proteins pseudo : _no_value

name	LOC625335 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 135 ESTs, 7 Proteins pseudo : _no_value

name	LOC625342 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins pseudo : _no_value

name	LOC100041220 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Nsun6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74455 MGI:1921705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arl5b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75869 MGI:1923119
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC633061 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 14 Proteins pseudo : _no_value

name	LOC667329 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667329
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	LOC227588 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:227588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 12 Proteins pseudo : _no_value

name	St8sia6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22003887 GeneID:241230 MGI:2386797
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 transcript_id : NM_145838.1

name	Ptpla (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60031667 GeneID:30963 MGI:1353592
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a transcript_id : NM_001012396.1

name	Ptpla (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60031580 GeneID:30963 MGI:1353592
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a transcript_id : NM_013935.2

name	Stam (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560544 GeneID:20844 MGI:1329014
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 transcript_id : NM_011484.2

name	2010003H20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486798 GeneID:625286 MGI:1919309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010003H20 gene transcript_id : NM_001081310.1

name	Mrc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678931 GeneID:17533 MGI:97142
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannose receptor, C type 1 transcript_id : NM_008625.1

name	Slc39a12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858550 GeneID:277468 MGI:2139274
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 39 (zinc transporter), member 12 transcript_id : NM_001012305.1

name	Cacnb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385513 GeneID:12296 MGI:894644
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, beta 2 subunit transcript_id : NM_023116.2

name	LOC100041220 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248911 GeneID:100041220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100041220 transcript_id : XM_001476307.1

name	Nsun6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328504 GeneID:74455 MGI:1921705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NOL1/NOP2/Sun domain family 6 transcript_id : NM_028950.3

name	Arl5b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352800 GeneID:75869 MGI:1923119
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor-like 5B transcript_id : NM_029466.3

name	St8sia6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003888 CCDS:CCDS15697.1 GeneID:241230 MGI:2386797
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008373 - sialyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0016051 - carbohydrate biosynthesis [Evidence IDA]; GO:0009247 - glycolipid biosynthesis [Evidence IDA]; GO:0006486 - protein amino acid glycosylation [Evidence IEA]; GO:0006493 - protein amino acid O-linked glycosylation [Evidence IDA] codon_start : 1 note : alpha-2, 8-sialyltransferase; ST8Sia VI; alpha2,8-sialyltransferase VI; sialyltransferase 8 (alpha-2, 8-sialyltransferase) F product : sialyltransferase 8 F protein_id : NP_665837.1

name	Ptpla (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60031581 GeneID:30963 MGI:1353592
definition	codon_start : 1 exception : unclassified translation discrepancy note : isoform 1 is encoded by transcript variant 1 product : protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a isoform 1 protein_id : NP_038963.2

name	Ptpla (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60031668 GeneID:30963 MGI:1353592
definition	codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2 product : protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a isoform 2 protein_id : NP_001012396.1

name	Stam (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755668 CCDS:CCDS15698.1 GeneID:20844 MGI:1329014
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 protein_id : NP_035614.1

name	2010003H20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486799 GeneID:625286 MGI:1919309
definition	codon_start : 1 product : hypothetical protein LOC625286 protein_id : NP_001074779.1

name	Mrc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678932 CCDS:CCDS15700.1 GeneID:17533 MGI:97142
definition	GO_component : GO:0009986 - cell surface [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005537 - mannose binding [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IDA] GO_process : GO:0006897 - endocytosis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : macrophage mannose receptor 1 product : mannose receptor, C type 1 protein_id : NP_032651.1

name	Slc39a12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858551 CCDS:CCDS15701.1 GeneID:277468 MGI:2139274
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046873 - metal ion transporter activity [Evidence IEA] GO_process : GO:0030001 - metal ion transport [Evidence IEA] codon_start : 1 product : solute carrier family 39 (zinc transporter), member 12 protein_id : NP_001012305.1

name	Cacnb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789144 CCDS:CCDS15702.1 GeneID:12296 MGI:894644
definition	GO_component : GO:0005891 - voltage-gated calcium channel complex [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0008331 - high voltage-gated calcium channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : calcium channel beta 2 subunit product : calcium channel, voltage-dependent, beta 2 subunit protein_id : NP_075605.1

name	LOC100041220 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248912 GeneID:100041220
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476357.1

name	Nsun6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328505 CCDS:CCDS15703.1 GeneID:74455 MGI:1921705
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : NOL1/NOP2/Sun domain family 6 protein_id : NP_083226.2

name	Arl5b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229225 CCDS:CCDS15704.1 GeneID:75869 MGI:1923119
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : ADP-ribosylation-like factor 8 product : ADP-ribosylation factor-like 8 protein_id : NP_083742.2

name	LOC667329 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667329
definition	number : 1 pseudo : _no_value

name	LOC667329 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667329
definition	number : 2 pseudo : _no_value

name	LOC100041164 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248904 GeneID:100041164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 352 ESTs, 5 Proteins product : similar to ribosomal protein L26 pseudo : _no_value transcript_id : XR_032618.1

name	LOC625335 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248908 GeneID:625335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 135 ESTs, 7 Proteins product : similar to nuclear protein-NHP2-like protein pseudo : _no_value transcript_id : XR_032632.1

name	LOC625342 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248907 GeneID:625342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins product : similar to lactate dehydrogenase 1, A chain pseudo : _no_value transcript_id : XR_032625.1

name	LOC633061 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248898 GeneID:633061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 14 Proteins product : similar to peptidylprolyl isomerase D pseudo : _no_value transcript_id : XR_032267.1

name	LOC227588 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248899 GeneID:227588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 12 Proteins product : similar to translation initiation factor eIF-4C - human pseudo : _no_value transcript_id : XR_032294.1

clone name	MSMg01-325E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318P02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-095H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153J23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-433B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-097H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402C07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-378O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N10
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-539E16.T7 (MSMg01no539_e16.b1)	MSMg01-539E16.TJ (MSMg01no539_e16.g1)
ACC	AG605818	AG605819
length	795	794
length of high quality (start - end)	622 (46 - 667)	212 (78 - 289)
definition	CHROMAT_FILE: MSMg01no539_e16.b1 PHD_FILE: MSMg01no539_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:11 2005	CHROMAT_FILE: MSMg01no539_e16.g1 PHD_FILE: MSMg01no539_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:11 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCTTTGTTTACCTCTATACCCCATTTTTAATAGGGTTATTTGGTTTT AAGGAAACCAACTTTTTGAGTTCTTTATATATATTGGATATTAGTCCCCT ATCTGATTTAGGATTGTTAAAGATCTTTCCCCAATTTGTTGGCGGCCTTT TTGTCATATTGACAGTGTCCTTTGCCTTACAGAAGTTTTGTAATTTTGTG AGGTCCCATTTGTCGATCCTTGATATTACAGGACAAGCCATTGGTGTTCT GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTCTTCCCCACTT TCTCCTCTATAAGTGTCAGTGTCTCTGGTTTTATGTGGAGTTAGACTTGA GCTTTGTACAAGTAGGTAAGAATGGATCAATTCACATTCCTCTACATGAG AACTGACAATTGAGCCAGCACCATTTGATGAAAATGCTGTCTTTTTTCCA CTGGATGGTTTTAGCTACTTTGTCAAAGATCAAGTGACCATAGGTGTGTG GGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTCTGTCA CTGTACCAATATCATGCAGTTTTTAATCACAATTGCTCTGTAGCATAGCA TGAAGTCAGCGATGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATA GTTTCTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGC CTTTTCNTACTCAGTGAAGGATTGAGTTGAAAATTTGATATGTTN	AACATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGATCCCTCCTTGTTTTATGC TTAATAAAAGCTCATCCTAAAAGATTTCTTATGAGTAGCTCTAGAGCATC ATATTAGAAAATAAGAACAATAATTCCTATGAATTCTTATAAATACTGGG GCAGCATGTGCTCCATTAGAGTATGTGTGCGAATGACTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNCNCTTGNANATTT ATTATGTATTTCTTTTTTTTTCTTGAGACTCGTCTTGACTCCTCTCCATA TGTTCGTCGACTCCTCATCGTATTCCACATAGTATTGTTCAATTCCACCT CCTCTTGATCTTTTATGCTCTGCATTCCTTTTTATGTATCCTACATAATT TTGACTTCTTTATTATTTTCCCGGTTCTGTTTATCTGAGTTTTCTATCTT TTTAGTTATCTGTTCTTCACTCTTTTTTTCTTATTTTTTGTCCCTTGACT TGGCTTTTTATGTTTTTCGTTCTCCCCTCGCTTTAATTCTTCGCGTCTTG TATTTTTTTATATTCCTTTTTTACTCTTCTATTTCCTCTTTTTTTCTCAT TTCTGTAATCACTTACGTTCCCGTTTATATATTGTTCCCTTCCTGCCCCC CCTGTTACAGTATATCCTTCGTTCTCAAACCGTTTCTTTTTGTCTTGTTA TTCCCTTCACATTTTTTTCTCCTTCTCCCCATTTTTTTACTTCN
quality values	Open. Hide. 8 8 8 8 8 8 11 17 32 37 37 37 37 37 37 20 19 10 10 10 22 22 39 48 44 30 28 24 20 20 13 15 9 13 12 9 10 14 22 30 23 23 29 29 30 31 59 48 57 36 36 35 35 37 42 59 57 57 57 35 30 21 14 14 18 30 34 54 54 57 57 57 57 57 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 59 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 57 57 57 57 57 59 59 57 57 57 57 57 57 57 57 57 68 57 59 59 68 57 57 57 57 57 57 59 68 59 59 52 57 57 57 59 59 57 57 57 59 59 57 57 57 57 57 57 57 68 57 57 57 57 59 59 59 59 59 59 68 59 59 57 57 54 54 54 57 57 57 57 57 57 54 54 54 57 57 57 57 57 57 57 68 68 59 59 57 57 54 54 54 57 57 48 57 48 48 57 57 57 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 59 59 59 59 59 57 57 57 57 59 59 59 59 57 57 54 46 46 43 43 43 46 47 54 54 57 57 48 48 48 48 48 48 48 48 48 48 57 57 57 48 48 48 48 43 59 39 39 39 39 37 59 36 36 35 36 31 35 36 39 39 41 41 41 40 37 34 31 34 30 37 34 34 39 39 37 37 31 30 30 25 25 31 32 37 37 37 37 37 24 28 20 28 28 31 32 20 20 20 32 32 39 39 30 28 28 23 23 23 34 34 31 32 25 20 20 20 28 24 20 22 14 14 12 13 12 12 9 11 11 14 12 24 19 25 30 25 30 22 24 20 20 16 28 14 12 12 12 12 11 15 12 17 21 18 25 25 28 28 32 32 25 14 15 13 13 13 9 9 13 15 17 10 13 13 13 22 18 19 20 12 11 11 11 11 11 18 15 16 16 15 17 15 18 18 17 17 20 28 24 26 31 24 21 8 3 0 3 8 9 17 12 11 10 10 10 12 12 12 12 10 14 19 18 13 12 12 16 10 15 10 10 11 11 24 17 21 14 10 10 12 9 9 3 0	Open. Hide. 6 6 6 10 10 10 8 8 8 9 12 12 18 14 23 23 32 32 37 32 39 39 39 39 30 27 18 25 32 24 12 16 13 12 11 10 11 11 22 15 12 13 13 29 27 41 41 37 39 41 32 33 33 33 33 33 47 41 34 15 10 8 8 8 11 13 20 20 34 47 47 31 31 36 36 36 36 50 50 53 53 53 53 53 57 59 59 59 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 68 68 57 57 59 59 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 54 57 57 59 59 68 68 57 57 57 57 57 57 57 57 68 68 68 68 51 51 50 50 50 50 57 68 68 68 68 68 68 57 57 57 57 57 59 59 57 57 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 48 59 59 59 59 59 47 59 59 23 20 3 0 3 0 3 23 23 3 0 3 0 3 23 19 19 12 10 10 8 8 8 8 8 10 8 9 11 11 18 10 10 10 12 8 8 8 8 8 13 15 11 10 10 10 10 13 13 9 9 10 10 10 10 10 15 9 8 8 8 10 11 12 12 12 20 12 12 8 10 7 6 8 8 8 8 8 11 10 8 8 8 8 10 10 11 10 11 12 15 12 12 10 10 10 10 10 9 8 8 10 12 10 13 11 11 8 8 8 10 13 10 12 11 11 9 9 9 9 9 9 10 11 8 9 9 13 12 19 12 12 10 10 10 10 9 9 9 9 9 9 8 8 8 8 8 8 10 11 9 8 8 8 10 12 8 11 11 8 8 8 8 8 8 12 11 15 10 10 9 10 8 8 8 8 8 8 9 11 10 11 15 24 15 19 15 24 13 12 11 19 18 12 11 11 11 11 13 14 10 10 10 12 16 14 14 12 9 10 10 9 9 9 10 9 11 10 8 8 8 6 8 10 10 8 11 10 10 8 8 9 13 10 12 7 7 8 8 9 10 12 10 8 8 8 8 8 8 8 8 10 15 12 12 10 10 10 13 11 11 8 10 6 6 6 8 8 9 9 8 8 8 10 10 9 8 8 8 8 8 10 10 10 9 8 8 6 6 8 6 10 12 15 16 9 8 8 8 8 8 11 9 9 9 8 8 8 8 8 8 8 9 14 13 19 17 17 14 13 10 10 12 15 14 10 8 8 8 8 8 10 8 13 15 16 18 11 8 8 8 8 8 8 8 10 7 7 8 8 10 10 10 11 11 13 10 16 9 10 9 9 8 8 8 9 9 9 11 10 10 11 8 8 6 6 8 8 8 10 7 8 8 8 8 11 12 12 10 11 11 15 10 10 10 12 13 8 8 8 8 8 8 9 9 11 11 11 11 11 11 12 13 15 13 10 10 8 8 8 8 8 8 8 8 8 8 8 8 9 11 11 8 8 11 15 12 8 8 8 8 8 10 8 9 10 10 12 12 10 16 11 13 11 12 8 8 8 8 8 8 9 13 10 10 8 6 8 8 10 13 12 11 8 6 6 6 10 10 20 16 16 13 11 9 10 11 11 13 12 8 8 8 8 8 10 8 7 9 8 13 13 14 19 13 14 14 18 15 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no539_e16.g1 MSMg01no539_e16.g1 CHROMAT_FILE:
MSMg01no539_e16.g1 PHD_FILE: MSMg01no539_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:11 2005
         (212 letters)



>mm_chr2_14683342_14683953
          Length = 612

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgatccctccttgttttatgcttaataaaagctcatcctaaaagatttcttatgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgatccctccttgttttatgcttaataaaagctcatcctaaaagatttcttatgagta 260

                                                                       
Query: 61  gctctagagcatcatattagaaaataagaacaataattcctatgaattcttataaatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctagagcatcatattagaaaataagaacaataattcctatgaattcttataaatact 320

                                                                       
Query: 121 ggggcagcatgtgctccattagagtatgtgtgcgaatgactgtgtgtgtgtgtgtgtgtg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ggggcagcatgtgctccattagagtatgtgtgtgaatgactgtgtgtgtgtgtgtgtgtg 380

                   
Query: 181 tgtgtgtg 188
           ||||||||
Sbjct: 381 tgtgtgtg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information