Query= MSMg01no539_e22.b1 MSMg01no539_e22.b1 CHROMAT_FILE:
MSMg01no539_e22.b1 PHD_FILE: MSMg01no539_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:13 2005
(641 letters)
>mm_chr2_75150121_75151161
Length = 1041
Score = 1201 bits (621), Expect = 0.0
Identities = 633/637 (99%)
Strand = Plus / Plus
Query: 5 gaattctcagtgtccagggacatttgagatttggaccaacttctccaaaagggaagacag 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtggagagggacatttgagatttggaccaacttctccaaaagggaagacag 264
Query: 65 tctacaagtctgacggcatctgtccagtcaaaaggtaacccctaaaaatcttcaaaaccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctacaagtctgacggcatctgtccagtcaaaaggtaacccctaaaaatcttcaaaaccc 324
Query: 125 gatgccgggctaagtggaaaggttttccaccagatgtatgcaacagtgccatccagcggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgccgggctaagtggaaaggttttccaccagatgtatgcaacagtgccatccagcggc 384
Query: 185 tatcgcaataattacaagtgtatctcatttttcaaatgtaacctgttttataatcatata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatcgcaataattacaagtgtatctcatttttcaaatgtaacctgttttataatcatata 444
Query: 245 ttcttattgttttaaaatttaaaaatcgttaattttaaaattgaggagtatctctgattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttattgttttaaaatttaaaaatcgttaattttaaaattgaggagtatctctgattc 504
Query: 305 ccctaatccatctgtttctgcaggtgcagaaggggtgatgcctgacctacacacccggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctaatccatctgtttctgcaggtgcagaaggggtgatgcctgacctacacacccggca 564
Query: 365 ataccagaagtttcactaccttccgttggtaaacgcttcagggaaggctctgcaaccctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataccagaagtttcactaccttccgttggtaaacgcttcagggaaggctctgcaaccctg 624
Query: 425 aacgtgttttattgtagaacctcactaggaaactcatcagtatttattaaagatgaatta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacgtgttttattgtagaacctcactaggaaactcatcagtatttattaaagatgaatta 684
Query: 485 aaagaaggaggaaaaggaaaaacgggatagtgaagagaatagatgaatgaaaaagaagca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagaaggaggaaaaggaaaaacgggatagtgaagagaatagatgaatgaaaaagaagca 744
Query: 545 aagagaagagaggaggaagggacaaagagggcaagaaaagagaaaagagagatgagagac 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagggaagagaggaggaagggacaaagagggcaagaaaagagaaaagagagatgagagac 804
Query: 605 caggacttcccacctaaccttaccaaactttttcagt 641
|||||||||||||||||||||||||||||||||||||
Sbjct: 805 caggacttcccacctaaccttaccaaactttttcagt 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_e22.g1 MSMg01no539_e22.g1 CHROMAT_FILE:
MSMg01no539_e22.g1 PHD_FILE: MSMg01no539_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:13 2005
(574 letters)
>mm_chr2_75316493_75317466
Length = 974
Score = 1040 bits (538), Expect = 0.0
Identities = 564/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Minus
Query: 1 acaggctattgagctccagggatctattaatacccacctcccatgtttggatgtagccac 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 699 acaggctattgagctccagggatctattaatacccacctcccacgtttggatgtagccac 640
Query: 61 caagcctagctctttacatgggttctgagaccgaatgcttatgtatcggagcatgttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caagcctagctctttacatgggttctgagaccgaatgcttatgtatcggagcatgttcct 580
Query: 121 aactgggctttctccctgtctcaaaatcattctaatttaattaagatacttttctgtcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aactgggctttctccctgtctcaaaatcattctaatttaattaagatacttttctgtcca 520
Query: 181 tctctgtttctctttcagacagatgctgggcatacgtcaactggcggtctttcctctcat 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 519 tctctgtttctctttcagacagatgctgggcatatgtcaactggcggtctttcctctcat 460
Query: 241 ggaaatcacattgaaagtatgtatttctattctagtaatgtcattattcagcccttcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaaatcacattgaaagtatgtatttctattctagtaatgtcattattcagcccttcaaa 400
Query: 301 catctcctctattagagctgtctccagatctccagaattctgttttatgctggatttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 catctcctctattagagctgtctccagatctccagaattctgttttatgctggatttcta 340
Query: 361 ctaataacctacactgtgactcaacccagattgcagcaatttggtttttttttttttttt 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct: 339 ctaataacctacactgtgactcaacccagattgcagcaatttgggtttttttttgtttgt 280
Query: 421 tttttggttagcttttggggcagcattttttattccctatcataggtgtgccttgactct 480
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgtt---tagcttttggggcagcattttttattccctatcataggtgtgccttgactct 223
Query: 481 gcagtagtcttcccacccacgtctcctgggcacagggattaaagggcgagctactgtgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gcagtagtcttcccacccacgtctcctgggcacagggattaaagggcgagctactgtgcc 163
Query: 541 ccagtgatttcgtagtatttaaaaaaaaatccat 574
|||||||||||||||||||||||||||| |||||
Sbjct: 162 ccagtgatttcgtagtatttaaaaaaaa-tccat 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
