BAC Information

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BAC

Clone NameMSMg01-539I21
Chromosome2 (Build37)
Map Location 78,933,248 - 78,933,549
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539I21.T7 (MSMg01no539_i21.b1)MSMg01-539I21.TJ (MSMg01no539_i21.g1)
ACCAG606020AG606021
length781776
length of high quality
(start - end)		552 (77 - 628)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no539_i21.b1 PHD_FILE: MSMg01no539_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:33 2005CHROMAT_FILE: MSMg01no539_i21.g1 PHD_FILE: MSMg01no539_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTTCTTCCTTTCTTATAGAGTCCAGGCTGGTGTGTCACAGGGTGAT
CCCAAACCCAGAACAGGTGGGGCATGCAGGATCCGGGTCCAGCTGGGACT
GCAGGAGGGAGAAAGCCTTCTCTGGGAGTTTTAGCCTTACAACCTTTTTA
GAGGATATTCAGTGAAATGGCTTGTGAATATAGTGAATATAGTTTTTTTT
TTTCTGGGGTAAATCAAGGGCTGTATAAGAACCTTGGAGAATGGGGAAGC
GTTCTTCTTAGGGTGAAGTTTCATTGGCTGAAGCTTAAGGTTCTGGGAAC
ACCTCATTTGCATGGAGAGGCACTCTCTGAATCCCAGGTGCTTGCAGAGC
AGGTTCTTATCTGGAGGAAGTTGAACCTGTCACTTTGTCAAGGACTATGT
GACATTCCTCAGGTAGAGGATGTGTTAATCTGGCTCCCCAGATCAGGCAG
AGAGGAGGAAGCCCCTCTGAGAAAGGGAGTCTTCCACTTTGCCCTGAGCT
CAGGGGAGTTGTAGGACATGGTAGAGGACAGCCAGGAAGAAAACACTGAG
TCCAGAGTATTGTCCTCCACTAACTTCTGGAAGTGAAGTGGCATTGTCTA
AGGCACGTGAGAAGAAAGAGGCAAGATCAATGGCAAAATGATATAACTTA
TGGCAGAAAACACATATTTCATGTTTAAAAATCTGTCCCCTTTTATCTTA
GCTTCTGGGTACTTGGATTTTCTCCTTCTTT

GCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTAGACTGATTTTCCACGA
ACTTTCACCTAAACACTTGATTTGAGCTATAATACAAAACAATAATAGAG
AAAAGGTTAGAGAAGGAAGACAGATATATTGATAACTTTTATGTGTCAAC
CTGAATGGACCATCAATCCTCAGATGTTTGTCTAAACATTATTTCTGGAT
GCAGGTTTGAAGAAGCGTCTGTAATATTAACATTTGAATTGGTAGACCCA
GGGAAGCATAGTGTCTTCCCAATATCCCTTGTAGGCCTGAGTGGCACAAG
AATGAGGGCAAGCTTGAACCCATCTCTCCTCACGATGGTATTTGAGATGA
GGTATGGTTTAGGCTTTTTCCTGACATTTGCCTGTGATTTGAACTGATGT
TCCTAGCACTCTTGGTTTCCAGATCTTCAGACTACAGATCCTGGAACTTC
TCAGCCTTTACAATGCCTTGAGTTAATTTTAATAAATCAGTTTCTATCAC
ATATCTATCTTCTATGTATCACATATCTACATGTTTCTATTTATCCATCA
TTGTCTATTGATCTACCTATCTATTACTTATCCATTCATCTGTCATATCA
TTAGATTTCTTATTACTATGACCAAGGACCTGANCATTCATCCNAGGGGC
TTATTTTGGCTTATGTTGCAGGTATGATTAATCAAGGTGGACATGCCCAA
CCTGATAACAGCTTTATTTGGGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_i21.g1 MSMg01no539_i21.g1 CHROMAT_FILE:
MSMg01no539_i21.g1 PHD_FILE: MSMg01no539_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:33 2005
         (557 letters)



>mm_chr2_78933248_78934204
          Length = 957

 Score =  576 bits (298), Expect = e-168
 Identities = 301/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtagactgattttccacgaactttcacctaaacacttgatttgagctataatacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctcagtagactgattttccacgaactttcacctaaacacttgatttgagctataatacaa 243

                                                                       
Query: 61  aacaataatagagaaaaggttagagaaggaagacagatatattgataacttttatgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacaataatagagaaaaggttagagaaggaagacagatatattgataacttttatgtgtc 183

                                                                       
Query: 121 aacctgaatggaccatcaatcctcagatgtttgtctaaacattatttctggatgcaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aacctgaatggaccatcaatcctcagatgtttgtctaaacattatttctggatgcaggtt 123

                                                                       
Query: 181 tgaagaagcgtctgtaatattaacatttgaattggtagacccagggaagcatagtgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgaagaagcgtctgtaatattaacatttgaattggtagacccagggaagcatagtgtctt 63

                                                                       
Query: 241 cccaatatcccttgtaggcctgagtggcacaagaatgagggcaagcttgaacccatctct 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 62  cccaatatcccttgtaggcctgagtggcacaagaatgcgggcaagcttgaacccatctct 3

             
Query: 301 cc 302
           ||
Sbjct: 2   cc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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