Query= MSMg01no539_k24.b1 MSMg01no539_k24.b1 CHROMAT_FILE:
MSMg01no539_k24.b1 PHD_FILE: MSMg01no539_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(646 letters)
>mm_chr2_148008124_148009169
Length = 1046
Score = 1185 bits (613), Expect = 0.0
Identities = 634/641 (98%)
Strand = Plus / Plus
Query: 5 gaattcaactgctctctccagagacctcacaaagagggagtggagccctaaggacacatg 64
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactgcacacttcagagacctcacaaagagggagtggagccctaaggacacatg 264
Query: 65 tctcagcctttgggaagtgtaatatgataaagcaggaacctggggtggaagcagtaaaag 124
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tcccagcctttgggaagtgtaatatgataaagcaggaacctggagtggaagcagtaaaag 324
Query: 125 gaccacccagtggagcccatcaattaaaggctaagcatgaaaggggtgccctattcaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccacccagtggagcccatcaattaaaggctaagcatgaaaggggtgccctattcaaga 384
Query: 185 agcgaaggaagtacctggctcttgttaaactcttagtcaacactacatgctgctttaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcgaaggaagtacctggctcttgttaaactcttagtcaacactacatgctgctttaatg 444
Query: 245 acttcccagaatatttgtacagggaaaaatacagtccatctactgtgtacatcagggtca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttcccagaatatttgtacagggaaaaatacagtccatctactgtgtacatcagggtca 504
Query: 305 ttgcccggttagcacccagacctccctcccactcaaagctagagctgaatttcaggcaga 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ttgcccggttagcacccagacctccctcccactcaaagctagagctgactttcaggcaga 564
Query: 365 atcaaccccttgaggaggagatggatattaaattcagagaccaccctgacacctgtgatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcaaccccttgaggaggagatggatattaaattcagagaccaccctgacacctgtgatc 624
Query: 425 acacatacttccctcctgcagggaatatgggtcttggctcttctgattctgctggctgga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacatacttccctcctgcagggaatatgggtcttggctcttctgattctgctggctgga 684
Query: 485 agtcttgtccctccaactactacctccactgagcatcccatgtctatctacttgtttgac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtcttgtccctccaactactacctccactgagcatcccatgtctatctacttgtttgac 744
Query: 545 ttttggtttttggaattttttttacaggttccttcttagtcttccaagtagtggggttac 604
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttgggttttggaattttttttacaggttccttcttagtcttccaagtagtggggttac 804
Query: 605 agatgtgtgccaccacacctggcaccctgagtcattgggaa 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agatgtgtgccaccacacctggcaccctgagtcattgggaa 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_k24.g1 MSMg01no539_k24.g1 CHROMAT_FILE:
MSMg01no539_k24.g1 PHD_FILE: MSMg01no539_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(557 letters)
>mm_chr2_148152465_148153421
Length = 957
Score = 955 bits (494), Expect = 0.0
Identities = 527/554 (95%), Gaps = 25/554 (4%)
Strand = Plus / Minus
Query: 29 catggaaatagtttaaattctactcaaataactgtagagaagggtttctgagcttggatc 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 catggaaatagtttaaattctactcaaataactgtagagaagggtttctgagcttggatc 898
Query: 89 ctactgaccatttggtcagtatgaatatttataacaggaggctggctgtatagtacaggt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ctactgaccatttggtcagtatgaatatttataacaggaggctggctgtatagtacaggt 838
Query: 149 tgctcagaaatatctctctctgctctctttcaactgggtgccagtagcctcttactcttt 208
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgctcagaaatgtctctctctgctctctttcaactgggtgccagtagcctcttactcttt 778
Query: 209 ccagttaagatatccaaaaatgtctccaggcattgtgaaatgccctttggaggagaaaaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ccagttaagatatccaaaaatgtctccaggcattgtgaaatgccctttggaggagaaaaa 718
Query: 269 tcatcacagttgagaactactgtcctggatctctacatacgactagttactgttgactat 328
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 717 tcatcacagttgagaactactgtcctgtatctctacatacgactagttactgttgactat 658
Query: 329 cctcatttgacttttgcatagagccaaagaaattcatagcagtggtcatttcctcccttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctcatttgacttttgcatagagccaaagaaattcatagcagtggtcatttcctcccttg 598
Query: 389 tgggaatcttcctcccacacatgcatcattcagaatggaagtattctcaaagtttttgac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgggaatcttcctcccacacatgcatcattcagaatggaagtattctcaaagtttttgac 538
Query: 449 ttgcttgttacatactaagtttaatatgctgagcaaaaatagaga--------------- 493
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttgcttgttacatactaagtttaatatgctgagcaaaaatagagacatagtgggttctac 478
Query: 494 ----------cagcaggacaatagcagactctgagtttctgctcttgtggaatatccctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcccaaatttcagcaggacaatagcagactctgagtttctgctcttgtggaatatccctg 418
Query: 544 tgtatgtccctgag 557
||||||||||||||
Sbjct: 417 tgtatgtccctgag 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
