Query= MSMg01no539_l23.b1 MSMg01no539_l23.b1 CHROMAT_FILE:
MSMg01no539_l23.b1 PHD_FILE: MSMg01no539_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:48 2005
(604 letters)
>mm_chr2_99793394_99794399
Length = 1006
Score = 1006 bits (520), Expect = 0.0
Identities = 575/606 (94%), Gaps = 21/606 (3%)
Strand = Plus / Minus
Query: 1 cctttcatcctttttgtttgattgccttatttataattgaaaaagcctataggtgaaata 60
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 671 cctttcatcctttttgtgtgattgccttatttataattgaaaaagcctacaggtgaaata 612
Query: 61 gttgcatcaatttttcactcattatctcaccatgga--tttttttttttgagtgatctaa 118
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 611 gttgcatcaatttttcactcattatttcaccatggatttttttttttttgagtgatctaa 552
Query: 119 aagtcacacagcaagctccattattatggagatggcttgtctgcttcttcacttcaggaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagtcacacagcaagctccattattatggagatggcttgtctgcttcttcacttcaggaa 492
Query: 179 attcaaacccaaattagagctgtctttgttgtgtgtttttctttgtaaagaagtgatgtc 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 attcaaacccaaattagagctgtctttgttgtgtgtttttctttgtaaagaggtgatgtc 432
Query: 239 tttcacagattttaccaagaaaggatattcccatacttcatgtagagaatttaatattga 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 tttcacagattttaccaagaaaggatcttcccatacttcatgtagagaatttaatattga 372
Query: 299 gttgagttcagtttttctcaatttccctaggctcttccatttggaataaaattagataat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttgagttcagtttttctcaatttccctaggctcttccatttggaataaaattagataat 312
Query: 359 cataaactattaacttcaagaacttgtaaaactctcctaattcctgagtccttctagagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cataaactattaacttcaagaacttgtaaaactctcctaattcctgagtccttctagagg 252
Query: 419 tatataaaatattgttccttatcagttccttgtggcaacttgactcctggcttctttctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatataaaatattgttccttatcagttccttgtggcaacttgactcctgg---------- 202
Query: 479 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 538
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ---------ctttctttctttctttctttctttctttctttctttctttctttctttctt 151
Query: 539 tctttctttctttctttctttctttctctctctctctctctctctctctctctctctctc 598
||||||| ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 150 tctttctctctctctctctctctctctctctctctctctctctctctctctctctctctc 91
Query: 599 tttctc 604
||||||
Sbjct: 90 tttctc 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space: 591624
Effective search space used: 591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_l23.g1 MSMg01no539_l23.g1 CHROMAT_FILE:
MSMg01no539_l23.g1 PHD_FILE: MSMg01no539_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:49 2005
(472 letters)
>mm_chr2_99725737_99726608
Length = 872
Score = 905 bits (468), Expect = 0.0
Identities = 471/472 (99%)
Strand = Plus / Plus
Query: 1 aaatataagaagcttttaaaacattatatatttatataatcgcaaatgtttatgtataat 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaatataagaagcttttaaaacattatatatttatataatcacaaatgtttatgtataat 260
Query: 61 aggcatgcatattttaaatttcacaataaattagagtattaagcatgtactattacgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatgcatattttaaatttcacaataaattagagtattaagcatgtactattacgttt 320
Query: 121 tttcttgtttggataaaagggttactgtgagatatgttgaagaaatattttttcaagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttgtttggataaaagggttactgtgagatatgttgaagaaatattttttcaagtca 380
Query: 181 aaatattgtaatggaaaagaatgtattaattgaaaatgtcagacttttataattgaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatattgtaatggaaaagaatgtattaattgaaaatgtcagacttttataattgaaata 440
Query: 241 taaatgaaactatttgctgaaaattaaaaacagcatagtgtaaaaagtatatgtagtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatgaaactatttgctgaaaattaaaaacagcatagtgtaaaaagtatatgtagtctt 500
Query: 301 aagaaaatgtcaatgattcgagagacagttttaaagactataagaatgtaaaatgatctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaaatgtcaatgattcgagagacagttttaaagactataagaatgtaaaatgatctt 560
Query: 361 aaaatctcttcctaaatgtttactgtcagaagcgatataggaaagactacagaaggcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatctcttcctaaatgtttactgtcagaagcgatataggaaagactacagaaggcaca 620
Query: 421 ttttctggagataggtcaccattttgcatgactatgatggatgtactctgag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttctggagataggtcaccattttgcatgactatgatggatgtactctgag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
