Query= MSMg01no539_o06.b1 MSMg01no539_o06.b1 CHROMAT_FILE:
MSMg01no539_o06.b1 PHD_FILE: MSMg01no539_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:00 2005
(687 letters)
>mm_chr2_124989902_124990988
Length = 1087
Score = 1220 bits (631), Expect = 0.0
Identities = 673/697 (96%), Gaps = 16/697 (2%)
Strand = Plus / Plus
Query: 7 attctgcactaccttctttgaagagtctgatatgggggagagaggataaattcccttctg 66
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 191 attctgcacgagcttctttgaagagtctgatacgggggagagaggataaattcccttctg 250
Query: 67 tccatcttgggttcattgcctgtggtctcatgcatcagactgccagactgtcaggttaat 126
|||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 251 tccatcttgggttcattgcctgcggtctcacgcattagactgccagactgtcaggttaat 310
Query: 127 gagaaaacaacatgtttattaatgcattatgcacgcacatgggaggactccatggcgggt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagaaaacaacatgtttattaatgcattatgcacgcacatgggaggactccatggcgggt 370
Query: 187 gctggttcagaggagtggttagaacacttgacaatgagaaggaaatgtgagtttctttgg 246
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 gctggttcagaggagtggttagaacacttgacaatgagaagggaatgtgagtttctttgg 430
Query: 247 tggacaagtgagtgtgggtaggaaaataagtagagagatttgctaggagaaaagaactgg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tggacaagtgagtgtgggtaggaaaataagtagagagatttgctaggagaaaagaactgg 490
Query: 307 tcaggaaggcttgctggattcctgtggaaccttctgcgggctgacggggtttgcacgcgt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tcaggaaggcttgctggattcctgtggaaccttctgcgggctgacggggtttgcacgcgt 550
Query: 367 ctctgcgggtggtgtcagtccttccagataatggaagcaggaacacactcacacatgcat 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 551 ctctgcgggtggtgtcagtccttccagataatggaagcaggaacacactcacacgtgcat 610
Query: 427 gcgcccacctgggcacataggaaagctgagggatttacttgagcctgctctacttatgtt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcgcccacctgggcacataggaaagctgagggatttacttgagcctgctctacttatgtt 670
Query: 487 cactgtatagctcaaaaaaaa----------------cccaaaaaacaaatctttatacc 530
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 671 cactgtatagctcaaaaaaaaaaaaaaaaaaaaaaaacccaaaaaacaaatctttatacc 730
Query: 531 atgggtgatatattctagcatgttatttgcatctctcacactaccaaccacagctgaaca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgggtgatatattctagcatgttatttgcatctctcacactaccaaccacagctgaaca 790
Query: 591 tgcaggaggcttttcataaacatagcatttatgagtgtagtggtacactgacagagtagc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgcaggaggcttttcataaacatagcatttatgagtgtagtggtacactgacagagtagc 850
Query: 651 ctccatgagtactgccctttgtgcaccatgacaggga 687
|||||||||||||||||||||||||||||||||||||
Sbjct: 851 ctccatgagtactgccctttgtgcaccatgacaggga 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_o06.g1 MSMg01no539_o06.g1 CHROMAT_FILE:
MSMg01no539_o06.g1 PHD_FILE: MSMg01no539_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:00 2005
(422 letters)
>mm_chr2_125170072_125170893
Length = 822
Score = 607 bits (314), Expect = e-178
Identities = 347/358 (96%), Gaps = 2/358 (0%)
Strand = Plus / Minus
Query: 1 agctttatagaataataatgattagcaagaagtcaccatttcaaactagaataggaattt 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 556 agctttatagaataataatgattagcaagaagtcatcatttcaaactagaatgggaattt 497
Query: 61 gaacatatctgaatccacgtgcttttataaagccagggcaagggccaggcacagcaagac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 496 gaacatatctgaatccacgtgcttttataaagccagggcaagggccaggcacagcaaggc 437
Query: 121 tttgataatcatgaaagaacaagtctcatgctcttcaggatgatattatgggtgtgtcac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 436 tttgataatcatgaaagaacaagtctcatgctcttcaggatgatattatgggtgggtcac 377
Query: 181 ttcatttgcattctgaggcataacactggaagaaataattatgtaaatccttattgcttg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 ttcatttgcattctgaggcataacactggaagaaattattatgtaaatccttattgcttg 317
Query: 241 atggggaagttataagatgctggaaaaaa-ttagacttggagggaaatcaagatattagc 299
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 atggagaagttataagatgctggaaaaaaattagacttggagggaaatcaagatattagc 257
Query: 300 atcacatgtgtgacacagaggagtaaaaaaatatctaggcattaagaatggcagaagg 357
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 256 atcacatgtgtgacacagaggagtaaaaaa-tatctaaacattaagaatagcagaagg 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
