BAC Information

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BAC

Clone NameMSMg01-540B21
Chromosome2 (Build37)
Map Location 89,123,651 - 89,124,307
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229
Downstream geneOlfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540B21.T7 (MSMg01no540_b21.b1)MSMg01-540B21.TJ (MSMg01no540_b21.g1)
ACCAG606444AG606445
length737740
length of high quality
(start - end)
660 (43 - 702)605 (76 - 680)
definitionCHROMAT_FILE: MSMg01no540_b21.b1 PHD_FILE: MSMg01no540_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:17 2005CHROMAT_FILE: MSMg01no540_b21.g1 PHD_FILE: MSMg01no540_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAACAGTTACAGGTAGAAAGAGGCTTGAGGTTTCTAATGGAAAAAAA
AAAAACTGCTATCTTTTCCCTGTCCTTTCAATAAACCATGCTTGAGCCTG
GAGGCAGAGATTCTCTCCAATATTTAAATAAGATTGGATATTTGTTTTCC
TGACTTCACATTAATCTCCTGAATCATGAGTTTCTTACAAATAAAAGAGG
TTAAGATAGCTAGGGCCTTGTGGGCTGCTGTTTTTAAATTTTTCTTATTA
CTAATCATTAGAACAAAACTTAGGTGTGGCATTATTTGCTTTTATGAACT
TCTATTCCAATTTCAGATGATGACTTTTAAAAACCTTGACATTAATATTT
AAGTCTATATCTGTGCTTATTTATCTTTCTTTTGTATAAAAATCTATTAT
TAAATCATGATAGCAGGTGTCACATTTGTTTTAGCCAAAAGTCTGAAGAC
TCATACAAATTTATAAAGGCATGTTCAGTTTACATTTTTTTAAACTTTGA
AAAATTACCTATGATGTTTGTTTCCTAAAATGCAGGTTATTTCTTCTATT
TATAGATGACACTTTTTAGTTATCTAGTCATTTCTATGTACTTCCCTAAC
AATGGAAGATATGAATAAACATGGTCCTTGCTTCCTCATAAGATGAACAA
AATGTCAGAAGACTTTGTAGCAATTCATTTAGGATCT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAAAAACACTAAAACGTATGCACACAG
GACATGATACAGACTCTTGCAGACTCTGTGCATGTGAAAGACTCCATGAG
GAGCCCCTTGCTCAGGCTTCGGGACAATAGTGGACACAAAAGAACTCATG
AGAGACCAAACTTGATGTAAACCACATGAGGCTTTATTCAGGGAAAGCCA
GAGATCTGGGGACGACTCATATCCCATGCAGGGTAGAGGAGTTGACCTCG
AGGGGAAAGAGGTCCCAGTTTTTATAGGCCCTCATGGGGGAAAGGAGAAG
GGGAGAGTAGGGGATTTCCAGATCTAAACAATATCTATTCTCAAGAAATG
GGTATGGGAGAACAAGGAAAGTGTCTGGTGCAGGTATAGTAACTCAGGAT
TGGCCCAGCTGTGGTTGCTGGGGAGATTTTCTGACTCTTTCTCAGCAACC
AATATAGTAACTAATATCACAAACACCTGGCAGTGAGGTGCAGCAGTGGG
CATACACCTGGGTTCAAGGAATGGTCAGAACATTGGCAGACACACAGGTT
CGAGGAGCGGCCAGAGCATTGTGCACCTCTATTTTTCTAAATCAGTGTAG
CTAGTTCTGCTAACAATAAAATCTATCTTGCCAATTACAGGGCTTCTGTG
ACCTTTTACATTCTGTCAGGATCTTTCACATGCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_b21.b1 MSMg01no540_b21.b1 CHROMAT_FILE:
MSMg01no540_b21.b1 PHD_FILE: MSMg01no540_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:17 2005
         (660 letters)



>mm_chr2_89123447_89124507
          Length = 1061

 Score = 1127 bits (583), Expect = 0.0
 Identities = 640/659 (97%), Gaps = 5/659 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaacagttacaggtagaaagaggcttgaggtttctaatggaaaaaaaaaaaac 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861 gaattattaacagttacaggtagaaagaggcttgaggtttctaatggaaaagaaaaaaac 802

                                                                       
Query: 65  tgctatcttttccctgtcctttcaataaaccatgcttgagcctggaggcagagattctct 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctatcttttccctgtcttttcaataaaccatgcttgagcctggaggcagagattctct 742

                                                                       
Query: 125 ccaatatttaaataagattggatatttgttttcctgacttcacattaatctcctgaatca 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaatatttaaataggattggatatttgttttcctgacttcacattaatctcctgaatca 682

                                                                       
Query: 185 tgagtttcttacaaataaaagaggttaagatagctagggccttgtgggctgctgttttt- 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 681 tgagtttcttacaaataaaagaggttaagatagctagggacttgtgggctgctgttttta 622

                                                                       
Query: 244 aaatttttcttattactaatcattagaacaaaacttaggtgtggcattatttgcttttat 303
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattttt-ttattactaatcattagaacaaaacttaggtgtggcattatttgcttttat 563

                                                                       
Query: 304 gaacttctattccaatttcagatgatgacttttaaaaaccttgacattaatatttaagtc 363
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 gaaattctattccaatttcagatgatggcttttaaaaaccttgacattaatatttaagtc 503

                                                                       
Query: 364 tatatctgtgcttatttatctttcttttgtataaaaatctattattaaatcatgatagca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 tatatctgtgcttatttatctttcttttgtataaaaatctattattaaatcataatagca 443

                                                                       
Query: 424 ggtgtcacatttg-ttttagccaaaagtctgaagactcatacaaatttataaaggcatgt 482
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtgtcacatttggttttagccaaaagtctgaagactcatacaaatttataaaggcatgt 383

                                                                       
Query: 483 tcagtttacatttttttaaactttgaaaaattacctatgatgtttgtttcctaaaatgca 542
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 tcagtttacatttttttaaactttgaaaaagtacctatgatgtttgtttcctaaaatgca 323

                                                                       
Query: 543 ggttatttcttctatttatagatgacactttttagttatctagtcatttctatgtacttc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 322 ggttatttcttctatttatagatgacactttttagttatctagtcatttctatgttct-c 264

                                                                      
Query: 603 cctaa-caatggaagatatgaataaacatggtccttgcttcctcataagatgaacaaaa 660
           || || |||||||||||||||||||||| ||||||  ||||||||||||||||||||||
Sbjct: 263 ccaaaacaatggaagatatgaataaacacggtcctcacttcctcataagatgaacaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)