Query= MSMg01no540_n01.b1 MSMg01no540_n01.b1 CHROMAT_FILE:
MSMg01no540_n01.b1 PHD_FILE: MSMg01no540_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:13 2005
(355 letters)
>mm_chr2_19165409_19166164
Length = 756
Score = 516 bits (267), Expect = e-151
Identities = 326/347 (93%), Gaps = 9/347 (2%)
Strand = Plus / Plus
Query: 5 gaattctgtgattgctcaactctccccagaaggtaactttgcgtcctacatttatttcca 64
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgattgctcagctctccccagaaggtaactttgcgtcctacatttatttcca 264
Query: 65 aaatgaaactgattttttttt-acattttattaaactacacatcaaaaagaacttatgag 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgaaactgattttttttttacattttattaaactacacatcaaaaagaacttatgag 324
Query: 124 ccatcagctgtgaattgtcattataatcttacaaaccaccaaaccacagctccattttca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatcagctgtgaattgtcattataatcttacaaaccaccaaaccacagctccattttca 384
Query: 184 atttccagaaagtgtgatgtgggcaagatttgtagagctttgttgtccagagcctctgtc 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 atttccagaaagtgtgatgtgggcaagatttgtagagctttgctgtccagagcctctgtc 444
Query: 244 tctctgtccctggctctgtctctgtctctgtctc--tgtctctctctctcttctctgtct 301
|||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||| ||
Sbjct: 445 tctctgtccctgtctctgtct--gtctccgtctccctgtctctctctctct-ctctctcc 501
Query: 302 ctctctctcttctctctctctctctctctctctctctctctctctct 348
| |||||||| | ||||| ||||| | | ||||||||| ||||||||
Sbjct: 502 ccctctctctcc-ctctccctctcccac-ctctctctc-ctctctct 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space: 258462
Effective search space used: 258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_n01.g1 MSMg01no540_n01.g1 CHROMAT_FILE:
MSMg01no540_n01.g1 PHD_FILE: MSMg01no540_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:13 2005
(638 letters)
>mm_chr2_19337416_19338452
Length = 1037
Score = 1133 bits (586), Expect = 0.0
Identities = 619/630 (98%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 1 ttagaaggaaggcagagttaagagaagtcatgtagtgaggctggaactacagtagcttgt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttagaa-gaaggcagagttaagagaagtcatgtagtgaggctggaactacagtagcttgt 771
Query: 61 gtgtgggatctccgagaaaggtctgctgccccagcctgtggatagaaagacaagggtgga 120
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 770 gtgtgtgatcttcgagaaaggtctgctgccccagccagtggatagaaagacaagggtgga 711
Query: 121 aatcaagagcaagagggatatttgaggaacttagctgcattcacacgccactttcccaac 180
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 710 aatcaagagcaagggggatatttgaggaacttagctgcatttacactccactttcccaac 651
Query: 181 ggatcctggatgtagaatgcccagtcccagcaagagccaggcacataggacaaccagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggatcctggatgtagaatgcccagtcccagcaagagccaggcacataggacaaccagcca 591
Query: 241 gccagccttgtatacttgaggtaatttgggaacggggaaggtgtattggggcagctttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gccagccttgtatacttgaggtaatttgggaacggggaaggtgtattggggcagctttgc 531
Query: 301 aggcagagcaggtcctggccatgaagagaaactcactgtcaagcggcccctaagttaaat 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aggcagagcaggtcctggccacgaagagaaactcactgtcaagcggcccctaagttaaat 471
Query: 361 tggcatttaggatgctgtttgtggaaaaccttgaggagtgaccctcagatgatgtcttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tggcatttaggatgctgtttgtggaaaaccttgaggagtgaccctcagatgatgtcttca 411
Query: 421 ctggatttggtcctcgggacttctgtacaatttcacttctttcctaaggcgagagctctt 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctggatttggtcctcgagacttctgtacaatttcacttctttcctaaggcgagagctctt 351
Query: 481 tcatcatttcccaccaaggagacagtacccatgcttaagtacttaaccactgcagtactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcatcatttcccaccaaggagacagtacccatgcttaagtacttaaccactgcagtactg 291
Query: 541 tttgctaaggtctgcggtcaaagtaagaaaacacagaattcacattgccagtgctgttct 600
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 290 tttgctaaggtctgcggtcaaagtaagaaaacacagaattcacgtagccagtgctgttct 231
Query: 601 ttctgagttttcaaatgtctgaggtgggag 630
||||||||||||||||||||||||||||||
Sbjct: 230 ttctgagttttcaaatgtctgaggtgggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
