Query= MSMg01no541_e09.b1 MSMg01no541_e09.b1 CHROMAT_FILE:
MSMg01no541_e09.b1 PHD_FILE: MSMg01no541_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:51 2005
(689 letters)
>mm_chr2_178961420_178962508
Length = 1089
Score = 1284 bits (664), Expect = 0.0
Identities = 679/686 (98%), Gaps = 4/686 (0%)
Strand = Plus / Plus
Query: 8 ttcatggctattcttgatgaagccaccatgcccaggaaggaccaagacagattgacgtgt 67
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcatggctagccttgatgaagccaccatgcccaggaaggaccaagacagattgacgtgt 267
Query: 68 ctgagacccagacctgcgtcctccagcctcaaggaactgactttcagcaatccagaaagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgagacccagacctgcgtcctccagcctcaaggaactgactttcagcaatccagaaagg 327
Query: 128 aaccctcaccacctcaggtgcagcctggagaatctctgaacagaaagtgtggctagggtt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaccctcaccacctcaggtgcagcctggagaatctctgaacagaaagtgtggctagggtt 387
Query: 188 ataacggggctcatcaaaaattacaagataataaatggatgttttcaagacgtcctgttt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ataacggggctcatcaaaaattacaagataataaatggatgttttcaagacgtcctgttt 447
Query: 248 atggtaacatgtggtatgacagagacagctaaggcaccagctacagcctcaggtacaggc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atggtaacatgtggtatgacagagacagctaaggcaccagctacagcctcaggtacaggc 507
Query: 308 taagcaaacatagcttctctcaatgtgcaatcctctgataccagcacccacagcctcacc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taagcaaacatagcttctctcaatgtgcaatcctctgataccagcacccacagcctcacc 567
Query: 368 tgggagcggcaggctgacccatacaacctgtcttatataataaggcaagcccctcagagg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgggagcggcaggctgacccatacaacctgtcttatataataaggcaagcccctcagagg 627
Query: 428 acctggtgagtggttggtcatgagttggctggccatgcccagaagcaatgatgggaacca 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acctggtgagtggttggtcatgagttggctggccatgcccagaagcaatgatgggaacca 687
Query: 488 gttgctaagctgttgagcatagcacagagtgcctgtggggacacagaagatggaaaactg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gttgctaagctgttgagcatagcacagagtgcctgtggggacacagaagatggaaaactg 747
Query: 548 acagggtccaccttcaggtgcagctggatccaggtgcatttctgagtaatccttagccag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 acagggtccaccttcaggtgcagctggatccaggtgcatttctgagtaatccttagccag 807
Query: 608 gccttagttagt----gctcactggtatcctgaggcctgagtgcactggtgtcagatgca 663
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gccttagttagttagtgctcactggtatcctgaggcctgagtgcactggtgtcagatgca 867
Query: 664 tccggtaaaaaagaccagatagagga 689
||||||||||| ||||||||||||||
Sbjct: 868 tccggtaaaaaggaccagatagagga 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_e09.g1 MSMg01no541_e09.g1 CHROMAT_FILE:
MSMg01no541_e09.g1 PHD_FILE: MSMg01no541_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:52 2005
(666 letters)
>mm_chr2_179130677_179131742
Length = 1066
Score = 1212 bits (627), Expect = 0.0
Identities = 649/665 (97%), Gaps = 14/665 (2%)
Strand = Plus / Minus
Query: 1 tcctaatgtgctttaaaatcagacctttgagctcacttcagggtctctccatctttgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tcctaatgtgctttaaaatcagacctttgagctcacttcagggtctctccatctttgtag 725
Query: 61 atggtagaccccagcatgctggacttctgcagaataaaacgttctttttgtttatatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atggtagaccccagcatgctggacttctgcagaataaaacgttctttttgtttatatact 665
Query: 121 atttgagtacggggtatcattctttggtgaatatagacccttgcaaaaccttgtttgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atttgagtacggggtatcattctttggtgaatatagacccttgcaaaaccttgtttgtct 605
Query: 181 aaaactagaaagtggtgattcacagagataaagtttcttaaggagtgagcgtcacttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaactagaaagtggtgattcacagagataaagtttcttaaggagtgagcgtcacttgaa 545
Query: 241 atctggggaggagatagtctatagacgtagggattggggtgctggtctcattatgcacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atctggggaggagatagtctatagacgtagggattggggtgctggtctcattatgcacct 485
Query: 301 taaatacgtgcaggtgatggcgtgacccttgccaagatgaagctgactttgatgacaacc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taaatacgtgcaggtgatggtgtgacccttgccaagatgaagctgactttgatgacaacc 425
Query: 361 tgggtacctgccagtcacttagatcatcctcttgtgttggctgcacaaagtacatcctta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgggtacctgccagtcacttagatcatcctcttgtgttggctgcacaaagtacat----- 370
Query: 421 tacagatgcccttgagttaaatggaacagccttggtaagtgttccggttgtttccagttc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ---------ccttgagttaaatggaacagccttggtaagtgttccggttgtttccagttc 319
Query: 481 cccactattcgcggtggttgccatatgtgtgcgtgtgatttcgctgcctttttttttttt 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 cccactattcgcggtggttgccatatgtgtgcatgtgatttcgctgcctttttttttttt 259
Query: 541 gtcagcatttctgtaaatggattttctagaaatggaattgttgggtcaatggtatgcaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtcagcatttctgtaaatggattttctagaaatggaattgttgggtcaatggtatgcaca 199
Query: 601 gtttaatttctaaatgacgctgtccaactgctctgcaaaattaaaaaagccaacctcaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtttaatttctaaatgacgctgtccaactgctctgcaaaattaaaaaagccaacctcaac 139
Query: 661 agata 665
|||||
Sbjct: 138 agata 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
