NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGAC
CCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTATCGATTTTCGATCTTACAGCATAAGCCATTGCTGT
TCTATTCAGGAATTTTTCCCCTGTGCCAATATCTTCGAGGCTTTTCCACA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGCTCCTTG
ATCCACTTAGATTTGACCTTCATACAAGGAGATAGAAATGGATCAATTCG
CATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTTTCTGTCTCTATACCAGTACCATGCTGTTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCT
TTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTATGTTATTCCAGA
TGAATTTGN

CGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTTCTCTAGAAATACTTTGTCTCTT
TGACATGGCACTAGCTTGTGTTGAAAGCATTGTTCTTAGACAAAGTGCCT
GCTGCAGTAAATAGCAAACGGAAATTACTCAGAGACAGAAAGCACTTGGA
GATACAGATTTTTGTTCACTGGGAACTCACTGTCCTGTTCCGAAATGGAT
GTTGGTTTCTTTTCTGCCAATGTTCTTTCTTTTGAGATGATCTGTGGAAA
GAGTACACATTCCTGTAGCATCATCATCATGGTTGCTAGGCCTACCATGG
TGAAATTATGTCTTTAGGTTGATGGTTAAGTCATGAGTCATCCAGTCTCA
CTCTATTTTCAATATAATTCAAAATTCCATCCGTAAATTATTACAGTCAG
ATCTTTTGTGAAAATATTGGCAAATAAAAGGCTGTAAACACTCTTATTTT
GAAGATGTTCCCATCTCAGTCATGAATCTTCAGATGGCTTTCAAATACAG
GCTATAATCATGTCTAGATCTACTTAAGTTTTTAACATACTTTTATTTAC
AGCTTTGGAAGCACACTAAAGTGTGCCATGGGTTTCATTTTAATAGAAAA
TGTATTGGGCACTGTTATTAAGGTTCACATTTAATAAACAATTAGATATC
CAGTAATTATAAAATACAAAAATTGTAGGTGTTGTTTCTACTTAAGTGTG
GTAATG

Query= MSMg01no541_f18.g1 MSMg01no541_f18.g1 CHROMAT_FILE:
MSMg01no541_f18.g1 PHD_FILE: MSMg01no541_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:58 2005
         (601 letters)



>mm_chr2_66339890_66340890
          Length = 1001

 Score = 1052 bits (544), Expect = 0.0
 Identities = 586/600 (97%), Gaps = 2/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcttctctagaaatactttgtctctttgacatggcactagcttgtgttg-aaagcattgt 61
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 801 tcttctctagaaatactttgtctctttgacatggcattagcttgtgttgaaaagcattgt 742

                                                                       
Query: 62  tcttagacaaagtgcctgctgcagtaaatagcaaacggaaattactcagagacagaaagc 121
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 tcttagacacagtgcctgctgcagtaaatagtaaacggaaattactcagagacagaaagc 682

                                                                       
Query: 122 acttggagatacagatttttgttcactgggaactcactgtcctgttccgaaatggatgtt 181
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 acttggagatacagatttttgttcactgggaactcactgttctgttccgaaatggatgtt 622

                                                                       
Query: 182 ggtttcttttctgccaatgttctttcttttgagatgatctgtggaaagagtacacattcc 241
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtttcttttctgccaaagttctttcttttgagatgatctgtggaaagagtacacattcc 562

                                                                       
Query: 242 tgtagcatcatcatcatggttgctaggcctaccatggtgaaattatgtctttaggttgat 301
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tgtaacatcatcatcatggttgctaggcctaccatgatgaaattatgtctttaggttgat 502

                                                                       
Query: 302 ggttaagtcatgagtcatccagtctcactctattttcaatataattcaaaattccatccg 361
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ggttaagtcatgagtcatccagtctcactgtattttcaatataattcaaaattccatccg 442

                                                                       
Query: 362 taaattattacagtcagatcttttgtgaaaatattggcaaataaaaggctgtaaacactc 421
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 taaattattacagtcaga-cttttgtgaaaatattggcaaatcaaaggctgtaaacactc 383

                                                                       
Query: 422 ttattttgaagatgttcccatctcagtcatgaatcttcagatggctttcaaatacaggct 481
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttattttgaagatgttctcatctcagtcatgaatcttcagatggctttcaaatacaggct 323

                                                                       
Query: 482 ataatcatgtctagatctacttaagtttttaacatacttttatttacagctttggaagca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ataatcatgtctagatctacttaagtttttaacatacttttatttacagctttggaagca 263

                                                                       
Query: 542 cactaaagtgtgccatgggtttcattttaatagaaaatgtattgggcactgttattaagg 601
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 262 cactaaagtgtgccatgggtttcattttaatagaaaatgtattgggtgctgttattaagg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)