BAC Information

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BAC

Clone NameMSMg01-541H05
Chromosome2 (Build37)
Map Location 151,194,689 - 151,195,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
Downstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541H05.T7 (MSMg01no541_h05.b1)MSMg01-541H05.TJ (MSMg01no541_h05.g1)
ACCAG607462AG607463
length757734
length of high quality
(start - end)		665 (54 - 718)648 (85 - 732)
definitionCHROMAT_FILE: MSMg01no541_h05.b1 PHD_FILE: MSMg01no541_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:06 2005CHROMAT_FILE: MSMg01no541_h05.g1 PHD_FILE: MSMg01no541_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATTGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTGGGGTAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAATCTTTGC
AATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTT
TCCCTACTTTCTCCCCTATAGGTTTCAGTGTCTCTGGTTTTATGTGGAGT
TCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATC
AATTCTCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAG
ATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTT
CCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCA
CAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCACCAGAG
GTACTTTTATCCTTGAGAAGAGTTTTTGCTATCCTTAGGTTTTTGTTATT
CCAGATG

TAATTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATGGGTCAGTTGC
ACAGCTGTTTAGTTTCTAGGAAAGAGGAAATGTTTTATATGTGACAGAAA
ATGAACTATTGGCAATGTAGTACAGTATAGCTAAGTAAGTACTGAAGTGC
AGATAAATACCTAAAATATGAATTATGCCCAGTCAGCACTTTTTCAGGGG
ACGAAGGGTACCTAGTTCATGGAAAGCAGAATTCCAAAATTGTCCAGGTA
TTGTCTTTATTCCCAGAAAGAGTTGGAACATCCAGACACGATTTTTTACC
GATAATAACCATAAATAGATTGATTTGGAATCATCTGCTATTGTTGGCAT
ACGAGCACGTGGATAAAGACTGCTGACACAGCATGTCTCCAACAGCTGTG
GAGCCAGAATCCTTGACTGACATTCAGGCCTGTCCAGAGAGCATTATATG
GGCCTTAACAAGGGACCTGGCTTGTCCTGCTTTGTACTTCTTTATAACAC
CTAAATGAAACCCACCTCCAATGAGGCTACAACATGCACAGGGCTTAGAG
TAAGGCCTCACACCTGCATGGTAGGCGCTGGGAAAGCTCACTCCGTTCTG
AAGAGTTTCCCTCTCTAGTTGATATTTTTATATATAAACAAATAAATATA
TACATACAAACGGCTGAGTCTGTTTAGTGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_h05.g1 MSMg01no541_h05.g1 CHROMAT_FILE:
MSMg01no541_h05.g1 PHD_FILE: MSMg01no541_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:06 2005
         (648 letters)



>mm_chr2_151194489_151195536
          Length = 1048

 Score = 1237 bits (640), Expect = 0.0
 Identities = 646/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgggtcagttgcacagctgtttagtttctaggaaagaggaaatgttttatatgtga 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgtgtcagttgcacagctgtttagtttctaggaaagaggaaatgttttatatgtga 260

                                                                       
Query: 61  cagaaaatgaactattggcaatgtagtacagtatagctaagtaagtactgaagtgcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaaatgaactattggcaatgtagtacagtatagctaagtaagtactgaagtgcagat 320

                                                                       
Query: 121 aaatacctaaaatatgaattatgcccagtcagcactttttcaggggacgaagggtaccta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aaatacctaaaatatgaattatgcccagtcagccctttttcaggggacgaagggtaccta 380

                                                                       
Query: 181 gttcatggaaagcagaattccaaaattgtccaggtattgtctttattcccagaaagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcatggaaagcagaattccaaaattgtccaggtattgtctttattcccagaaagagtt 440

                                                                       
Query: 241 ggaacatccagacacgattttttaccgataataaccataaatagattgatttggaatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaacatccagacacgattttttaccgataataaccataaatagattgatttggaatcat 500

                                                                       
Query: 301 ctgctattgttggcatacgagcacgtggataaagactgctgacacagcatgtctccaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctattgttggcatacgagcacgtggataaagactgctgacacagcatgtctccaaca 560

                                                                       
Query: 361 gctgtggagccagaatccttgactgacattcaggcctgtccagagagcattatatgggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtggagccagaatccttgactgacattcaggcctgtccagagagcattatatgggcc 620

                                                                       
Query: 421 ttaacaagggacctggcttgtcctgctttgtacttctttataacacctaaatgaaaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaacaagggacctggcttgtcctgctttgtacttctttataacacctaaatgaaaccca 680

                                                                       
Query: 481 cctccaatgaggctacaacatgcacagggcttagagtaaggcctcacacctgcatggtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctccaatgaggctacaacatgcacagggcttagagtaaggcctcacacctgcatggtag 740

                                                                       
Query: 541 gcgctgggaaagctcactccgttctgaagagtttccctctctagttgatatttttatata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcgctgggaaagctcactccgttctgaagagtttccctctctagttgatatttttatata 800

                                                           
Query: 601 taaacaaataaatatatacatacaaacggctgagtctgtttagtgttt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaacaaataaatatatacatacaaacggctgagtctgtttagtgttt 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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