Query= MSMg01no541_i05.b1 MSMg01no541_i05.b1 CHROMAT_FILE:
MSMg01no541_i05.b1 PHD_FILE: MSMg01no541_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:12 2005
(654 letters)
>mm_chr2_72483646_72484700
Length = 1055
Score = 926 bits (479), Expect = 0.0
Identities = 518/531 (97%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 5 gaattcccagccctataatgaccggcacatacaagtcctttgaaacaccttacaaaagtg 64
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 531 gaattcccaggcctataatgaccggcacatataagtcctttgaaacaccttacaaaagtg 472
Query: 65 gctcctggcacagttctttcttacgtccttgctcatctgtgtcctcacaagcaaggcctc 124
||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct: 471 gctcctggcgcagttctttcttatgtccttgctcgtctgtgtcctcataagcaaggcctc 412
Query: 125 ttttgtccatatatcttccagcattcttatcttctagctcattaagctccgagtgcttga 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 ttttgtccgtatatcttccagcattcttatcttctagctcattaagctccgagagcttga 352
Query: 185 tgcaaaactccaaaatcttccacagtcctagaacgaaatagtccagaagcataagggttt 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 351 tgcaaaactccaaaatcttccacagtcctagaacaaaatagtccagaagcataagggttt 292
Query: 245 gtgtgcctgggcccatcac-aaaaccccactctcctgcttttgtttcttatgcttatggc 303
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 291 gtgtgcctgggcccatcacaaaaaccccactctcctgcttttgtttcttgtgcttatggc 232
Query: 304 ctctcttctctaacattccttaaccactgttttcttcccaaagttcccttgtttcgggtc 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 231 ctctcttctctaacattccttaaccactgttttcttcccaaagctcccttgtttcgggtc 172
Query: 364 ctccatgaagtctttaatctagttcaaattgagtttgtacaaaatgatgggggatgtggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctccatgaagtctttaatctagttcaaattgagtttgtacaaaatgatgggggatgtggg 112
Query: 424 tcgagtctcagtcttctgcatatatgtacgcaatttccagaaaaccattcacgagaagac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tcgagtctcagtcttctgcatatatgtacgcaatttccagaaaaccattcacgagaagac 52
Query: 484 tgtcctttctagatgcatgatgattgcacccaaaggctgtgttagatgact 534
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 51 tgtcctttctagatgcatgatgattgcacccaaaagctgtgttagatgact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_i05.g1 MSMg01no541_i05.g1 CHROMAT_FILE:
MSMg01no541_i05.g1 PHD_FILE: MSMg01no541_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:12 2005
(609 letters)
>mm_chr2_72341300_72342307
Length = 1008
Score = 1164 bits (602), Expect = 0.0
Identities = 607/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 1 taaactggcttatcacttcaaaatgcataaaccagggagtgctgggcaggccagaagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaactggcttatcacttcaaaatgcataaaccagggagtgctgggcaggccagaagagg 260
Query: 61 aagacgaagaagagagcaggagcaggctggaggctcaccagtcctgccaggtgaggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacgaagaagagagcaggagcaggctggaggctcaccagtcctgccaggtgaggcttt 320
Query: 121 gtttggcctacactgtctgtggtacatgagggcacacgcacattctcacgcagctccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttggcctacactgtctgtggtacatgagggcacacgcacattctcacgcagctccacg 380
Query: 181 ctcccttgcctgcaagcctgctgcccccaaactctttttagagtgccagctctgagtggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccttgcctgcaagcctgctgcccccaaactctttttagagtgccagctctgagtggg 440
Query: 241 gcttaaagagccatctgcggtgcctgcttcatgcacatggtcagcgctttgtggaggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttaaagagccatctgcggtgcctgcttcatgcacatggtcagcgctttgtggaggctg 500
Query: 301 cttacgggagtgctttagaactcagcctctttgtccggcaggcctcacacttctgttagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacgggagtgctttagaactcagcctctttgtccggcaggcctcacacttctgttagt 560
Query: 361 ttttttttttccccctaaattgaaccactcctgtccctaattgtatcactcctgctggcc 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttttttt-ccccctaaattgaaccactcctgtccctaattgtatcactcctgctggcc 619
Query: 421 cctctagccatcagagcccgtggcatggttctgattgtgttgcaatgcgtccttgaagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctctagccatcagagcccgtggcatggttctgattgtgttgcaatgcgtccttgaagca 679
Query: 481 tcctttttgtttgtgttcaatggctctccttcagctcacaacacagtggtagctgtggnt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 tcctttttgtttgtgttcaatggctctccttcagctcacaacacagtggtagctgtggtt 739
Query: 541 tcctagggtcagccattctcctctgaggaccagcccagaaaagccccgtcgtaatgaacg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcctagggtcagccattctcctctgaggaccagcccagaaaagccccgtcgtaatgaacg 799
Query: 601 gggcttcag 609
|||||||||
Sbjct: 800 gggcttcag 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
