BAC Information

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BAC

Clone NameMSMg01-541L10
Chromosome2 (Build37)
Map Location 48,130,911 - 48,131,269
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541L10.T7 (MSMg01no541_l10.b1)MSMg01-541L10.TJ (MSMg01no541_l10.g1)
ACCAG607664AG607665
length757736
length of high quality
(start - end)		660 (50 - 709)634 (76 - 709)
definitionCHROMAT_FILE: MSMg01no541_l10.b1 PHD_FILE: MSMg01no541_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:28 2005CHROMAT_FILE: MSMg01no541_l10.g1 PHD_FILE: MSMg01no541_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAACTTTGTACACCATTTTTAATAGGGTTATTTGA
TTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCC
CTCTATTGAAAGCAGGGTTGGTAAAGATCTTTTTCCAATCTGTTGGTTGC
CTCTTTGTCCTATTGACAGTGCCCTTTGCCTTACAAAAGCTCTGCAATTT
TATGAAATCCCACTTGTCAATTCTGAGTCTTAAAGCAAATCTATTGGTGT
TTTGTTCAGAAAAATTTCCCCTGTGCCACATTCTTTTCTTTTAATTACAG
TGTATCTAGTTTTATGTGGTGGTCCTTGATACATTTGGGCTTGAGCTTGG
TACAAGGAGATAAGAATGGTTAGATTTGCCTTATTATACGTGCTAACTGA
CAGTTGAACCAGCAACATTTGTTGAAAATGCTGGAAATTTTAGCTATTTG
TCAAAGATCAAGTGACCATAGGTGTGTAGGTTCATTTCTGGGTCTTCAAT
TCTATTCCATTGATCTACCTTCCTGTCACTGTATGAATACCATACAGTTT
TTATCACTATTGCTCTGTAGTACAGCTTGAGGTAGGGATGGTGATTCCCC
CAGAAGTTCTTTTATTGTGGAGAATAGTTTTTGCTATCCCAGGATTTTTA
TTATTCCAGATGAATTTGGAAATCACTCTTTCTAACTCTATGAAGAATTG
GGTGGAN

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATATACAAGTATAGAACTCTCA
AAGGATATGTTCTTTGAAGAGATATCATTTGGAGTGACTAGCCTTTATTC
CTGGTTCTCTTTTTTTTTTTTTTAGTACACCTTCAAGACTATATTAGTTA
GGGTTCTCCAGAAGAACTGAACATATAAACAATATGTATATACACACACA
CACACACACACACATATATATATATATATATATATATATAGAGAGAGAGA
GAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGAAAGG
GATTTATTAGACTGACTTACAGACTGTGGACCAACCAATCCAACATAGGC
TGCCTATAAATGGAAGGTCCAAGATTCCAGTGTATGTCTCAGCTGGTCTT
CAGTATACACTGGAATCCTGAACAAGTAGTCTCTGATGCTAGTGAAGGAA
TGGACTTGCTAGCCAGCTGATAGCAAGCAGACAGAGTGAAAGCTTTCTTC
TTCCAAGTCCTCTTACAAACTTCAAGAAGAAGGGATAGCCTAGACTGGAG
GTAAGTTTTCACAGCTCAAAAGATCTGAATTAAAGATATGTCTCCCTACC
TCAAAATCCAGATTAGAAGTAAATATTTATACTTCCAGTTAAACAAATAA
TACCCCAAAAGAGGTACCTCTGCATTTTTTGCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_l10.g1 MSMg01no541_l10.g1 CHROMAT_FILE:
MSMg01no541_l10.g1 PHD_FILE: MSMg01no541_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:28 2005
         (634 letters)



>mm_chr2_48130911_48131947
          Length = 1037

 Score =  555 bits (287), Expect = e-162
 Identities = 339/361 (93%), Gaps = 11/361 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatacaagtatagaactctcaaaggatatgttctttgaagagatatcatttggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 actatatacaagtatagaactctcaaaggatatgttctttgaagagatatcatttggagt 300

                                                                       
Query: 61  gactagcctttattcctggttctctttttttttttttt---agtacaccttcaagactat 117
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 299 gactagcctttattcctggttctcttttttttttttttttaagtacaccttcaagactat 240

                                                                       
Query: 118 attagttagggttctccagaagaactgaacatataaacaatatgtatatacacacacaca 177
           |||||||||||||||||||||||||||||||||||||||||||||||||  | | | | |
Sbjct: 239 attagttagggttctccagaagaactgaacatataaacaatatgtatat--atatatata 182

                                                                       
Query: 178 cacacacacacatatatatatatatatatatatatatagagagagagagagagagagaga 237
            | | | | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatatatatatatatatatatatatatatatatatatagagagagagagagagagagaga 122

                                                                       
Query: 238 cagagag----agac--agagagagacagagagagagagaaagggatttattagactgac 291
            ||||||    ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagagagacaaagacagagagagagacagagagagagagaaagggatttattagactgac 62

                                                                       
Query: 292 ttacagactgtggaccaaccaatccaacataggctgcctataaatggaaggtccaagatt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttacagactgtggaccaaccaatccaacataggctgcctataaatggaaggtccaagatt 2

            
Query: 352 c 352
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1037
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1027
Effective search space:   640848
Effective search space used:   640848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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