Query= MSMg01no541_n04.b1 MSMg01no541_n04.b1 CHROMAT_FILE:
MSMg01no541_n04.b1 PHD_FILE: MSMg01no541_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:37 2005
(669 letters)
>mm_chr2_164549044_164550111
Length = 1068
Score = 1058 bits (547), Expect = 0.0
Identities = 635/701 (90%), Gaps = 57/701 (8%)
Strand = Plus / Minus
Query: 25 gctgggcttgaactcagagatctgcctgcccctgcctcttaagggctcagattagaaggc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gctgggcttgaactcagagatctgcctgcccctgcctcttaagggctcagattagaaggc 1009
Query: 85 accacctcctggctaaa------------------------------------------- 101
|||||||||||||||||
Sbjct: 1008 accacctcctggctaaatttcttcctttctttctttctttctttctttctttctttcttt 949
Query: 102 -------------tttctttctttctttcttcaagacaagagtttctctgtgcagccctg 148
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 948 ctttctttctttctttctttctttctttctttaagacaagagtttctctgtgcagccctg 889
Query: 149 gctgtcttgcaattcactctgtagaccaggctggcttcaaactaagagattcacttgtct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gctgtcttgcaattcactctgtagaccaggctggcttcaaactaagagattcacttgtct 829
Query: 209 ctgcctcctgagtgctgacactaaaagtgtgcaaccctgtgcctgctttattccctttcc 268
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 828 ctgcctcctgagtgctgacactaaaagtgtgcgaccctgtgcctgctttattccctttcc 769
Query: 269 ttacaaaagcacaagaatttgatgaagggaactctgctcttctccaaatcctattcacct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttacaaaagcacaagaatttgatgaagggaactctgctcttctccaaatcctattcacct 709
Query: 329 tccaagagcttaagcactgtagtcaaatgaactttcaagtttgtcttaatgggggtaaaa 388
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tccgagagcttaagcactgtagtcaaatgaactttcaagtttgtcttaatgggggtaaaa 649
Query: 389 cttcagcacgagaggcctttgtggtcatgcaaactattttcaaaccacaatagcattatc 448
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 648 cttcagcatgagaggcctttgtggtcatgcaaactattttcaaaccacaatagca-tatc 590
Query: 449 tgcaaattttggcctgggtagcaaacctaggggcatgaggtgttctctcatagacttttg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgcaaattttggcctgggtagcaaacctaggggcatgaggtgttctctcatagacttttg 530
Query: 509 tcatttgacactgtcatagctggtcctgcgttttaactgtaaagggattttactccttac 568
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcatttgacattgtcatagctggtcctgcgttttaactgtaaagggattttactccttac 470
Query: 569 aaatgtaattgttattctcttttatttatttcatgtatatgggtatactgttgctatctt 628
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 469 aaatgtaattgttattttcttttgtttatttcatgtatatgggtatactgttgctctctt 410
Query: 629 cagacaccccagaagagggcatcggatcctcattacagatg 669
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 409 cagacacaccagaagagggcatcggatcctcattacagatg 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_n04.g1 MSMg01no541_n04.g1 CHROMAT_FILE:
MSMg01no541_n04.g1 PHD_FILE: MSMg01no541_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:38 2005
(602 letters)
>mm_chr2_164431991_164432993
Length = 1003
Score = 1065 bits (551), Expect = 0.0
Identities = 590/603 (97%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 1 taaagttgtgcctcaatgctcctgtccttgttattgaaccaagcactaattgagacactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagttgtgcctcaatgctcctgtccttgttattgaaccaagcactaattgagacactg 260
Query: 61 ctaagaggaacctcataagcatgattcaagccctatcaacagggtcctttaaaagcaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagaggaacctcataagcatgattcaagccctatcaacagggtcctttaaaagcaggg 320
Query: 121 tttcatggtcggtagaggagttagagagattcaaactgtgggaaggttccaacagactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcatggtcggtagaggagttagagagattcaaactgtgggaaggttccaacagactgt 380
Query: 181 ctcagcagctttgtccatggcagatggccaagagccaggaagtgaggtggcttctaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagcagctttgtccatggcagatggccaagagccaggaagtgaggtggcttctaggat 440
Query: 241 ctggcatcactatagaaacgagagccccaggtctaaaactgtaaaaacacgattatacta 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ctggcatcactatagaaacgagagccccaggtctaaaactgtaaaaacatgattatacta 500
Query: 301 cacatgatctgagaagaggacccagatgagaacagcagccccggctggcactttgctctc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacgtgatctgagaagaggacccagatgagaacagcagccccggctggcactttgctctc 560
Query: 361 agcctggtgtgaatcttaatggaaattttagatgcaccacaccagatttctgacctcctc 420
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactggtgtgactcttaatggaaattttagatgcaccacaccagatttctgacctcctt 620
Query: 421 atagaggatctgtagcagcaggca-gacaatacagtgctccgtggctctgagctgaacac 479
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 621 atagaggttctgtagcagcaggcaagacaatacagtgctccgtggctctgagctgagcac 680
Query: 480 aggtaatcaggatttaatcacagagtgcagatcttcttgggttttggaaccatgcaactt 539
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 aggtagtcaggatttaatcatagagtgcagatcttcttgggttttggaactatgcaactt 740
Query: 540 tagaagatccacatatcagttctagcttcctggctttgtaagttcagggagttagatcag 599
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 741 tagaagatccacatatcagttctagcttgctggctttgtaagttcagggaattagatcag 800
Query: 600 gca 602
|||
Sbjct: 801 gca 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
