BAC Information

Click to search

BAC

Clone NameMSMg01-541P13
Chromosome2 (Build37)
Map Location 89,364,950 - 89,365,603
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
Downstream geneOlfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541P13.T7 (MSMg01no541_p13.b1)MSMg01-541P13.TJ (MSMg01no541_p13.g1)
ACCAG607860AG607861
length754759
length of high quality
(start - end)		663 (48 - 710)586 (79 - 664)
definitionCHROMAT_FILE: MSMg01no541_p13.b1 PHD_FILE: MSMg01no541_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:50 2005CHROMAT_FILE: MSMg01no541_p13.g1 PHD_FILE: MSMg01no541_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGCCTTAGTCTGTGGTAGTCTAATAGAATAAATGGGATTAAT
TCAATGTTCTTGTTTCTGTTGAGGCCTGCTTTGGGCCCAATTATGTGGTC
TGTTTTGTAGAAGGTACCATGAGGTATTAGCAAGAAGGTATATTCTTTTG
TTTAGAGTGAAATATTTTGAAGATATCTATTAATTCTATTTGGTTTGCTT
TACATGTTTATATCTGTAGGGATATAAACCTCATCTGAACCTCATTTTGA
GGTTTTCCAACAGCTGCAAATTTCTGCATTACTAGAGTCAATATTATTTT
AATTGTGTCTTGATTATGTAAGGTTTATTCTTAAATTTATGTGTATGTGT
AGGTATGATTCACTGAAAATATGTGTGCCATGAGCATTCATGTACCCGCA
GAAACTCAAGGTCATCAGATCCCCCTGAAACTGTATTTAGACATCTGTAA
TCCAACCGCTAAGTGTGTTTGGAACCAAACCTCCATACACTAAAAAAGCA
GATAGCATTTTCTTAACTGATTAATCCTTTCTGCAAAGTTCAGATATTTA
GTAAAGTCCTAATATTTACACAAATAATTTTCAGAAGATAGAAAATCTTT
AGCTTTTATACAGGGATAGATTGCAAATTATGGAGAAAATATACGCTGAA
AATTGCAGTAGAGAACAGTTGATTGTGTTCTTAAATATAGTTCTTCCTGG
GTAG

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAACCAGAGAGAGTGAG
ACTTACAGAGGAGAAAGTGGGGAAAAGCCTAGAAGATATGGGCACAGGGA
AAAATTCCTGAATAGAACAGCAATGGCATGTGTTATAAGATTAAGAATCG
ACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGAAAAAGACACC
GTCAATAAGACAAATAGGCCACCAGATTGGAAAAGGATCTTTACCTATCC
TAAATCAGATAGCGAACTAATATCCAATATATGTGTATATATATATATAT
ATATATATATATATATATATATATATATATATATATACACATACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACATAT
ATATATATATATATATATATATATATATCAAGAAGGTGGACTCCAGAAAA
TCAAATAACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCA
CCTGAGGAATACCAAATGCCTGAGAAGCACCTGAAAAAATGTTCAGCATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACTAGTCTGAGTGGCTAAGATCAAAAATTTAGGTGACCCCTCCACAGAG
GAATGGATACAGAATATGTGGTACATCTACACAATGGAGTACTACTCAGC
TATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_p13.b1 MSMg01no541_p13.b1 CHROMAT_FILE:
MSMg01no541_p13.b1 PHD_FILE: MSMg01no541_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:50 2005
         (663 letters)



>mm_chr2_89364741_89365803
          Length = 1063

 Score = 1212 bits (627), Expect = 0.0
 Identities = 649/659 (98%), Gaps = 5/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagccttagtctgtggtagtctaatagaataaatgggattaattcaatgttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccagccttagtctgtggtagtctaatagaataaatgggattaattcaatgttctt 269

                                                                       
Query: 65  gtttctgttgaggcctgctttgggcccaattatgtggtctgttttgtagaaggtaccatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtttctgttgaggcctgctttgggcccaattatgtggtctgttttgtagaaggtaccatg 329

                                                                       
Query: 125 aggtattagcaagaaggtatattcttttgtttagagtgaaatattttgaagatatctatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggtattagcaagaaggtatattcttttgtttagagtgaaatattttgaagatatctatt 389

                                                                       
Query: 185 aattctatttggtttgctttacatgtttatatctgtagggatataaacctcatctgaacc 244
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatt-----tggtttgctttacatgtttatatctgtagggatataaacctcatctgaacc 444

                                                                       
Query: 245 tcattttgaggttttccaacagctgcaaatttctgcattactagagtcaatattatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcattttgaggttttccaacagctgcaaatttctgcattactagagtcaatattatttta 504

                                                                       
Query: 305 attgtgtcttgattatgtaaggtttattcttaaatttatgtgtatgtgtaggtatgattc 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgtgtcttgattatgcaaggtttattcttaaatttatgtgtatgtgtaggtatgattc 564

                                                                       
Query: 365 actgaaaatatgtgtgccatgagcattcatgtacccgcagaaactcaaggtcatcagatc 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 actgaaaatatgtgtgccatgagcattcatatacccgcagaaactcaaggtcatcagatc 624

                                                                       
Query: 425 cccctgaaactgtatttagacatctgtaatccaaccgctaagtgtgtttggaaccaaacc 484
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 625 cccctgaaactgtatttagacatctgtaatccaaccgctaaatgtgcttggaaccaaacc 684

                                                                       
Query: 485 tccatacactaaaaaagcagatagcattttcttaactgattaatcctttctgcaaagttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccatacactaaaaaagcagatagcattttcttaactgattaatcctttctgcaaagttc 744

                                                                       
Query: 545 agatatttagtaaagtcctaatatttacacaaataattttcagaagatagaaaatcttta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agatatttagtaaagtcctaatatttacacaaataattttcagaagatagaaaatcttta 804

                                                                      
Query: 605 gcttttatacagggatagattgcaaattatggagaaaatatacgctgaaaattgcagta 663
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcttttagacagggatagattgcaaattatggagaaaatatacgctgaaaattgcagta 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |