Query= MSMg01no543_a02.b1 MSMg01no543_a02.b1 CHROMAT_FILE:
MSMg01no543_a02.b1 PHD_FILE: MSMg01no543_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:13 2005
(625 letters)
>mm_chr2_147933049_147934073
Length = 1025
Score = 1094 bits (566), Expect = 0.0
Identities = 616/646 (95%), Gaps = 25/646 (3%)
Strand = Plus / Plus
Query: 5 gaattccacaacagtcagatatgtatcacactgaactcaatgcacagcacacactgagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gaattccacaacagtcagatatgtatcacactgaactcaatgcacagcacacactgagca 239
Query: 65 tctaagaagggttcagttgtttttcctgcctgagactatttgtcaaatgaaactcttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 240 tctaagaagggttcagttgtttttcctgcctgagactatttgtcaaatggaactcttttg 299
Query: 125 agattggagtgtgttaattctttgtattgtcttggtgttagagataagagtcctgggatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agattggagtgtgttaattctttgtattgtcttggtgttagagataagagtcctgggatt 359
Query: 185 gctaagtacgaatgtctta----c------cattc----g---------ta--ccagagt 219
||||||||||||||||||| | || || | || |||||||
Sbjct: 360 gctaagtacgaatgtcttaaggtcactaagcaatcaccagagcaccaattagcccagagt 419
Query: 220 ggttctcctggccttacaaacaatattttctcacagggaagagcactgtggcctttggtt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggttctcctggccttacaaacaatattttctcacagggaagagcactgtggcctttggtt 479
Query: 280 aagtcggatctaagtcacaccctcggcagtcaaaattcagtgagccacctggtgactgca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagtcggatctaagtcacaccctcggcagtcaaaattcagtgagccacctggtgactgca 539
Query: 340 cattttatttggacaagctgcatacttttaaaacttaagctcttaaaaaattctttcaga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cattttatttggacaagctgcatacttttaaaacttaagctcttaaaaaattctttcaga 599
Query: 400 aatgtcaaggcgactgatgtattaaaaaaaagagccagggcaaacaaggatgacattctt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aatgtcaaggcgactgatgtattaaaaaaaagagccagggcaaacaaggatgacattctt 659
Query: 460 ttaattccttccccactgggtcatttctccttaacatccagatcggtgtgcggccatctt 519
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 660 ttaattcctcccccactgggtcatttctccttaacatccagatctgtgtgcggccatctt 719
Query: 520 ccataatgaatccttaacctatgcagaggtccatacctcagggaagctgtgaagcagctg 579
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccataatggatccttaacctatgcagaggtccatacctcagggaagctgtgaagcagctg 779
Query: 580 caatttttttcatcaagttgactcggtggccttctcaccccttccc 625
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 caatttttttcatcaagttgactcggtggccttctcaccccttccc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_a02.g1 MSMg01no543_a02.g1 CHROMAT_FILE:
MSMg01no543_a02.g1 PHD_FILE: MSMg01no543_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:13 2005
(659 letters)
>mm_chr2_148066880_148067938
Length = 1059
Score = 1208 bits (625), Expect = 0.0
Identities = 649/657 (98%)
Strand = Plus / Minus
Query: 1 ttttgtccactaccagcaagaagtagccaagaaactttatcttgctttgataatggctgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 857 ttttgtccactaccagcaagaagtagccaagaaactttatcttgctttgataatggctac 798
Query: 61 ttggagctcaaggtcactccctgaattggaggaagggaatgcagtatagggaatgactca 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 797 ttggagctcaaggtcactccctgaattggagggagggaatgcagtatagggaatgactca 738
Query: 121 ggacactgttaggaaggggagggtggagggcatgctatgtgctgaatctgacttgactcc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 737 ggacactgttaggaaggggagggtggagggcatgctatgcgctgaatctgacttgactcc 678
Query: 181 cctcctcctttcttttctcagaaacctctagagtcctgggaaaaacacatactgaacata 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 cctcctcctttcttttctcagaaacctctagagtcctggaaaaaacacatactgaacata 618
Query: 241 tttagtgcactacaggagatagggcatgtttgatacagagaatctgaggtcagaaatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttagtgcactacaggagatagggcatgtttgatacagagaatctgaggtcagaaatgtc 558
Query: 301 actgtgtaccaggcaagtgcagcccaatccagtttgtggtgaaggaatggtcaggctgtg 360
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 557 actgtgtaccaggcaagtgtagcccaatccagtttggggtgaaggaatggtcaggctgtg 498
Query: 361 tttgtgcaacttgactgttctgtggatgccaacaggggaactcatagtagaaagaggagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttgtgcaacttgactgttctgtggatgccaacaggggaactcatagtagaaagaggagc 438
Query: 421 agaaaagctaaggaataacacgggctgggttcacagtttgagtccaactgaccctaactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaaaagctaaggaataacacgggctgggttcacagtttgagtccaactgaccctaactt 378
Query: 481 caaagactctatcagaaatctcttgactcagactcatatttttatctgtgtgagtttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 caaagactctatcagaaatctcttgactcagactcatatttttatctgtgtgagtctctt 318
Query: 541 ccagcctgctcattgaaatacaaaccaaattttgcattggttaatggtaaaaataccaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccagcctgctcattgaaatacaaaccaaattttgcattggttaatggtaaaaataccaca 258
Query: 601 ggtgtctgcactgagctcacaaaggtgttggagtctgctgaacattagttctcacat 657
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 ggtgtctgcactgagctcacaaaggtgttggagtctgctgaacattaattctcacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
