BAC Information

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BAC

Clone NameMSMg01-543J13
Chromosome2 (Build37)
Map Location 88,489,572 - 88,490,245
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1
Downstream geneOlfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543J13.T7 (MSMg01no543_j13.b1)MSMg01-543J13.TJ (MSMg01no543_j13.g1)
ACCAG609094AG609095
length757766
length of high quality
(start - end)		571 (51 - 621)674 (77 - 750)
definitionCHROMAT_FILE: MSMg01no543_j13.b1 PHD_FILE: MSMg01no543_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:01 2005CHROMAT_FILE: MSMg01no543_j13.g1 PHD_FILE: MSMg01no543_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGG
AATTCTTTGTTTTTCTCTGTGCCCTGTTTTTAAATAATGTTATTTGGTCC
TCTGGAGTCTAACTTCTTGATTTTTTTTGTATATATTTGATATTAGCCCT
TTATTGGATATAGAGTTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCT
TTTTGTCCTATTGACAGTGTCCTTTGCCTTATAGAAGCTTTGCAATTTTA
TGAGGTCCAATTTGTAAATTGTTGATCTTAAAGCATAAGCTATTGGTGTT
TTGTTCAGGAACATTTCCCATAAGCCCATGTCCTTGAGGCACTTCCCCAC
TTTCTTTTCTATTCGTTTCAGTGTATCTGGTTTTATATGGAAGTCCTTGA
TCAACTGGGAGTTGAGCTATATACAAGGAGATAGGATTGGATCAGACTGC
ATTTTTCTACAGGCTAACCACCAGTTGAACCAGTGCCATTTGTTGGGAAT
GCTATCTCCCCCCCCCCCCACTGGATGGTTTTAGCTCGTTTGTCAAAGAT
CAAGTAACCATAAGTGTGTGGTTTCATTTCTGGGGCTTCAATTCTATTCC
ATTGATCTACCTGCATGTCATTGTACCATTATCATACAGTTTTTATCACA
ATTGCTCCGTAGCTTGAGGCCACGCATGGTGATTCCACCAAAATTTTTTT
TATCGCCGGGAATAGTTTTTGCTATCCTAGGTTTTTTGTTATCCAGATAA
AATTGGA

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATATACCACTGATTCTAGCTCC
TTTATTTTATGAACTAAGAGCATAAGGACCTGAATCTTAAGAAGTGACAA
TATTAGAAGTCAGACTCAATTTTCTGCCACCCCTTTATTTTTATCACATG
ACAAGTATCTGAAAATATAATATAAACAATCATTCTTAAGTAACATCAGT
CTTGAGGAGGTAGGAGATATTGCTACCTCAAACCTTGTAAGAAATATGCA
TCTGTGATTTTCCAGAGCTGGTTATAGATCTAAGAAATGATTCAGTTCAT
AATTCATGAACAGACTTTAAATTAATTTAAAATCCCATTTTAAATGAAAT
GGAAAATTCAATTGGAATTGAAATTCAGAAAAATGATATTTACTTGATGC
ATACAAACATGTATATAAAATTTAAAGTTGGATAAGGCAAAATTAATGCT
CAATTTATCTCTTCCTTTTTCTTGACTTTAGACAGGACTTATAAAGAGAT
GATGATGAATTCAGGATCTGGAGTCAAAAATCTATGCTTAGATGTGGTCG
GCTGTGTGATTGTTGTGTTATCATGCATGTATATCTTCCAGATTAAGATT
ATAGCTATTTTATTTACCTGTCAAATGATATATTAACACTATCACAATGC
AGTTATTAAAAACATTTTAATAAGACTTTTTATCTATTATGATAGTTGAA
ACTCAGAACAAATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_j13.g1 MSMg01no543_j13.g1 CHROMAT_FILE:
MSMg01no543_j13.g1 PHD_FILE: MSMg01no543_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:01 2005
         (674 letters)



>mm_chr2_88489372_88490445
          Length = 1074

 Score = 1288 bits (666), Expect = 0.0
 Identities = 672/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatataccactgattctagctcctttattttatgaactaagagcataaggacctgaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatataccactgattctagctcctttattttatgaactaagagcataaggacctgaatc 260

                                                                       
Query: 61  ttaagaagtgacaatattagaagtcagactcaattttctgccacccctttatttttatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagaagtgacaatattagaagtcagactcaattttctgccacccctttatttttatca 320

                                                                       
Query: 121 catgacaagtatctgaaaatataatataaacaatcattcttaagtaacatcagtcttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgacaagtatctgaaaatataatataaacaatcattcttaagtaacatcagtcttgag 380

                                                                       
Query: 181 gaggtaggagatattgctacctcaaaccttgtaagaaatatgcatctgtgattttccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtaggagatattgctacctcaaaccttgtaagaaatatgcatctgtgattttccaga 440

                                                                       
Query: 241 gctggttatagatctaagaaatgattcagttcataattcatgaacagactttaaattaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggttatagatctaagaaatgattcagttcataattcatgaacagactttaaattaat 500

                                                                       
Query: 301 ttaaaatcccattttaaatgaaatggaaaattcaattggaattgaaattcagaaaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaatcccattttaaatgaaatggaaaattcaattggaattgaaattcagaaaaatga 560

                                                                       
Query: 361 tatttacttgatgcatacaaacatgtatataaaatttaaagttggataaggcaaaattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttacttgatgcatacaaacatgtatataaaatttaaagttggataaggcaaaattaa 620

                                                                       
Query: 421 tgctcaatttatctcttcctttttcttgactttagacaggacttataaagagatgatgat 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tgctcaatttatctcttcctttttcttgactttggacaggacttataaagagatgatgat 680

                                                                       
Query: 481 gaattcaggatctggagtcaaaaatctatgcttagatgtggtcggctgtgtgattgttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattcaggatctggagtcaaaaatctatgcttagatgtggtcggctgtgtgattgttgt 740

                                                                       
Query: 541 gttatcatgcatgtatatcttccagattaagattatagctattttatttacctgtcaaat 600
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 gttatcatgcatgtatatcttccagattaagattttagctattttatttacctgtcaaat 800

                                                                       
Query: 601 gatatattaacactatcacaatgcagttattaaaaacattttaataagactttttatcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatatattaacactatcacaatgcagttattaaaaacattttaataagactttttatcta 860

                         
Query: 661 ttatgatagttgaa 674
           ||||||||||||||
Sbjct: 861 ttatgatagttgaa 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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