BAC Information

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BAC

Clone NameMSMg01-543M16
Chromosome2 (Build37)
Map Location 104,539,290 - 104,734,955
singlet/doubletdoublet
Overlap geneTcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Upstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3
Downstream geneCcdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M16.T7 (MSMg01no543_m16.b1)MSMg01-543M16.TJ (MSMg01no543_m16.g1)
ACCAG609244AG609245
length771758
length of high quality
(start - end)		636 (47 - 682)664 (78 - 741)
definitionCHROMAT_FILE: MSMg01no543_m16.b1 PHD_FILE: MSMg01no543_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005CHROMAT_FILE: MSMg01no543_m16.g1 PHD_FILE: MSMg01no543_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,539,290 - 104,539,920)(104,734,292 - 104,734,955)
sequence
CCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGTTGGTAATTTTCATTTCTATGACTTCAGCAAGTTCCTCTG
ATACACATATGTGAATACCGGTGCCTACAGAGCCAGAGGCAATGGATCTC
CGTGGAAATGGAGTTGCAAGTGACTATACACTGCCCAGCATAGGTGCCTG
GAATTGTACTCAAGTTCTCTTGCAAGAGCAGTACCCTTAACTACTGAGCC
ATCTCTCCAGCCTTCATCTTTTATTATTATCTTGCTTTGTTTCTGTTTTT
TGACATAGGGGCTCATTGTAGCTCTGCCTGGCTTCAAGCTCACTACATAG
TTGAGGAGGACCTTGAACTGATCCTCCTGCCTCTACTTCCCAAGTGTTAG
GATTGCGGGCACGTTACCACCTCACCTGGCTTCCCTGGCTCGGCAAAGGC
TGGGAATTAGATGATACAGTTAACGAAGTGAATGAAACAGTGCACTGACA
ACATTGGAAAAATAAGAGTGGCTACTACATCCTAATAGGGAAAAGATGGC
ATCAAAGATCTTCACAGACTCCAGAGCCTTTACTTGTATCCTGAAGTACA
CGTGGCTTTCAGACTCAAATTCACAACAGTCACTCCTGACCTAGAAATAT
TTTTAGCAGTGATGTAAAAAAAGGAAGAATGTACTTAAACACACTGGCAT
TGAGTGAAAAGCCATTCCCAGACCTGGGAAATGCTCTAGTACGCAAGTTC
ATGCACGCACTTGCCTTTGGN

NCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATTATTCTGAAGTGAAGGAG
AGGGTAAAGTGCAGTACACATTCAGACAGACACACGGACGCTAGGACGTA
AGAGTTCAGTGAGACTACTTTTGTCTTCACCATTTTACTGATCTTATATA
TCATGAACATTGTGAGTTTTTTTAAGTAGCTTTTCAAAAGCTCACAATAT
AAATCTGTATTTTGTTGCAATTTAAGAGCTATAAAGGCTTTTCTATCTTT
GAAGGTATTTATTAAAAATTACATCTTAAATACTCTACAATGAAAAGTAA
GTTAGCCTAGAATCCTGATAGGGGTCAGAGTAATAACACAAAATGGACAA
ATTACACTGTCATTCAACTTAAATTATTTAAGTTATTTAATTTGACCTGT
AGATAGTCTCTTGTCTTCTCATCATGCCTGACTTTTAAGTGGGAGGTCTT
CATTCATGATGATCCTTTAATGGAAGCAAAGCTTTCTCCATTTAACCCAT
GCTGTTATCAATCATGTACAGGGATAAATGAACCTCTAAGATTTTGCCAG
TATCACAAATGACACTGTGACCTGAGGCCAACATCTTTATTTGCTTCTCC
AGTGATTCACTTCAGCAGATATTAACCAATTTTATAATCCATGAAAGGCA
AAATTAAAGGACACCATCCATAAAACAGAATAATTCCTATCAGCAACAAA
GTGATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m16.b1 MSMg01no543_m16.b1 CHROMAT_FILE:
MSMg01no543_m16.b1 PHD_FILE: MSMg01no543_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (636 letters)



>mm_chr2_104539086_104540120
          Length = 1035

 Score = 1191 bits (616), Expect = 0.0
 Identities = 628/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagttggtaattttcatttctatgacttcagcaagttcctctgatacacatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagttggtaattttcatttctatgacttcagcaagttcctctgatacacatat 264

                                                                       
Query: 65  gtgaataccggtgcctacagagccagaggcaatggatctccgtggaaatggagttgcaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgaataccggtgcctacagagccagaggcaatggatctccgtggaaatggagttgcaag 324

                                                                       
Query: 125 tgactatacactgcccagcataggtgcctggaattgtactcaagttctcttgcaagagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgactatacactgcccagcataggtgcctggaattgtactcaagttctcttgcaagagca 384

                                                                       
Query: 185 gtacccttaactactgagccatctctccagccttcatcttttattattatcttgctttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtacccttaactactgagccatctctccagccttcatcttttattattatcttgctttgt 444

                                                                       
Query: 245 ttctgttttttgacataggggctcattgtagctctgcctggcttcaagctcactacatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgttttttgacataggggctcattgtagctctgcctggcttcaagctcactacatag 504

                                                                       
Query: 305 ttgaggaggaccttgaactgatcctcctgcctctacttcccaagtgttaggattgcgggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgaggaggaccttgaactgatcctcctgcctctacttcccaagtgttaggattgcgggc 564

                                                                       
Query: 365 acgttaccacctcacctggcttccctggctcggcaaaggctgggaattagatgatacagt 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 acgttaccatctcacctggcttccctggctcggcaaaggctgggaattagacgatacagt 624

                                                                       
Query: 425 taacgaagtgaatgaaacagtgcactgacaacattggaaaaataagagtggctactacat 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 taacgaagtgaatgaaacagtgcactgacaacactggaaaaataagagtggctactacat 684

                                                                       
Query: 485 cctaatagggaaaagatggcatcaaagatcttcacagactccagagcctttacttgtatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctaatagggaaaagatggcatcaaagatcttcacagactccagagcctttacttgtatc 744

                                                                       
Query: 545 ctgaagtacacgtggctttcagactcaaattcacaacagtcactcctgacctagaaatat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgaagtacacgtggctttcagactcaaattcacaacagtcactcctgacctagaaatat 804

                                           
Query: 605 ttttagcagtgatgtaaaaaaaggaagaatgt 636
           ||||||||||||||||||||| ||||||||||
Sbjct: 805 ttttagcagtgatgtaaaaaa-ggaagaatgt 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_m16.g1 MSMg01no543_m16.g1 CHROMAT_FILE:
MSMg01no543_m16.g1 PHD_FILE: MSMg01no543_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (664 letters)



>mm_chr2_104734092_104735155
          Length = 1064

 Score = 1276 bits (660), Expect = 0.0
 Identities = 663/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccattattctgaagtgaaggagagggtaaagtgcagtacacattcagacagacacacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tccattattctgaagtgaaggagagggtaaagtgcagtacacattcagacagacacacgg 805

                                                                       
Query: 61  acgctaggacgtaagagttcagtgagactacttttgtcttcaccattttactgatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acgctaggacgtaagagttcagtgagactacttttgtcttcaccattttactgatcttat 745

                                                                       
Query: 121 atatcatgaacattgtgagtttttttaagtagcttttcaaaagctcacaatataaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatcatgaacattgtgagtttttttaagtagcttttcaaaagctcacaatataaatctg 685

                                                                       
Query: 181 tattttgttgcaatttaagagctataaaggcttttctatctttgaaggtatttattaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tattttgttgcaatttaagagctataaaggcttttctatctttgaaggtatttattaaaa 625

                                                                       
Query: 241 attacatcttaaatactctacaatgaaaagtaagttagcctagaatcctgataggggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attacatcttaaatactctacaatgaaaagtaagttagcctagaatcctgataggggtca 565

                                                                       
Query: 301 gagtaataacacaaaatggacaaattacactgtcattcaacttaaattatttaagttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagtaataacacaaaatggacaaattacactgtcattcaacttaaattatttaagttatt 505

                                                                       
Query: 361 taatttgacctgtagatagtctcttgtcttctcatcatgcctgacttttaagtgggaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatttgacctgtagatagtctcttgtcttctcatcatgcctgacttttaagtgggaggt 445

                                                                       
Query: 421 cttcattcatgatgatcctttaatggaagcaaagctttctccatttaacccatgctgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcattcatgatgatcctttaatggaagcaaagctttctccatttaacccatgctgtta 385

                                                                       
Query: 481 tcaatcatgtacagggataaatgaacctctaagattttgccagtatcacaaatgacactg 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaatcatgtacagggataaatgagcctctaagattttgccagtatcacaaatgacactg 325

                                                                       
Query: 541 tgacctgaggccaacatctttatttgcttctccagtgattcacttcagcagatattaacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacctgaggccaacatctttatttgcttctccagtgattcacttcagcagatattaacc 265

                                                                       
Query: 601 aattttataatccatgaaaggcaaaattaaaggacaccatccataaaacagaataattcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattttataatccatgaaaggcaaaattaaaggacaccatccataaaacagaataattcc 205

               
Query: 661 tatc 664
           ||||
Sbjct: 204 tatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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