Query= MSMg01no543_m22.b1 MSMg01no543_m22.b1 CHROMAT_FILE:
MSMg01no543_m22.b1 PHD_FILE: MSMg01no543_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
(679 letters)
>mm_chr2_178745569_178746647
Length = 1079
Score = 1290 bits (667), Expect = 0.0
Identities = 673/675 (99%)
Strand = Plus / Plus
Query: 5 gaattcatcgtttgctggagctggaaacctcacgatccaactgctgccgatagcaccaca 64
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcatcgtttgctggacctggaaacctcacgatccaactgctgctgatagcaccaca 264
Query: 65 gccttaggggaccaagccttcaactcacaagtctttaaggtacagtttagatccaactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccttaggggaccaagccttcaactcacaagtctttaaggtacagtttagatccaactat 324
Query: 125 aacagacagaatcataacacactgcttctgtctttgctttttttaaataatatggattgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagacagaatcataacacactgcttctgtctttgctttttttaaataatatggattgg 384
Query: 185 aattatgtctcatccatgcccaaagaaccactccatttcctcaacagcatgtggtttcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattatgtctcatccatgcccaaagaaccactccatttcctcaacagcatgtggtttcca 444
Query: 245 cgaaaaccattccaatgctcccagcttggattgtgtcaacatgtccctacagttcacaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgaaaaccattccaatgctcccagcttggattgtgtcaacatgtccctacagttcacaag 504
Query: 305 gatcccactgctgaccttctgctcggggtctgtcacacacaggcaggtctgcttagcaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatcccactgctgaccttctgctcggggtctgtcacacacaggcaggtctgcttagcaga 564
Query: 365 cgctgataggggtgaaatgtctgagtcaaaggtttgacacattgtaattgtgttacactt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgctgataggggtgaaatgtctgagtcaaaggtttgacacattgtaattgtgttacactt 624
Query: 425 tacaaaatgtccaacacagatttcaggtctatttgcaccctcaggagacttttaaaacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacaaaatgtccaacacagatttcaggtctatttgcaccctcaggagacttttaaaacat 684
Query: 485 aatccattctcaggtctggcagtgtggaccagcaagccttgctgagcagttgctgagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatccattctcaggtctggcagtgtggaccagcaagccttgctgagcagttgctgagaaa 744
Query: 545 gaggcattgtcagggggcactggatgcagagcctctatatgctggctaagagctgagtca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaggcattgtcagggggcactggatgcagagcctctatatgctggctaagagctgagtca 804
Query: 605 atatcactctctgagttccctaaataactcctgtccacctctctattagcagttatttca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atatcactctctgagttccctaaataactcctgtccacctctctattagcagttatttca 864
Query: 665 aaataagtttttgcg 679
|||||||||||||||
Sbjct: 865 aaataagtttttgcg 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_m22.g1 MSMg01no543_m22.g1 CHROMAT_FILE:
MSMg01no543_m22.g1 PHD_FILE: MSMg01no543_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
(448 letters)
>mm_chr2_178896802_178897647
Length = 846
Score = 743 bits (384), Expect = 0.0
Identities = 440/478 (92%), Gaps = 32/478 (6%)
Strand = Plus / Minus
Query: 1 caaattagagagtcctcagttcccggtgctcttttctgccacccagcccagtgtcctcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caaattagagagtcctcagttcccggtgctcttttctgccacccagcccagtgtcctcga 472
Query: 61 agagagttcccggcggcagctgaaggagccacttctggccaggcatcatttttttttttt 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 agagagttcccggcggcagctgaaggagccacttctggccaggcatca--tttttttttt 414
Query: 121 ttaatatcctttggaaacatagcaggtgaagtccaagctccaaataggatcatggggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttaatatcctttggaaacatagcaggtgaagtccaagctccaaataggatcatggggaaa 354
Query: 181 agcagaaaatagcagcttagtgcattgtgatttcctctcagaaagccagtggggcttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agcagaaaatagcagcttagtgcattgtgatttcctctcagaaagccagtggggcttccc 294
Query: 241 ctgctggaacagggaaagctatggatattccatcccatgtttataagtcacctgttgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctgctggaacagggaaagctatggatattccatcccatgtttataagtcacctgttgatc 234
Query: 301 ctgacagaagctggacttggttgacactggg--------------------ccagcatcc 340
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 233 ctgacagaagctggacttggttgacactgggccttgctttgccacacaggaccagcatcc 174
Query: 341 tttaagactc----------tgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcacgcacg 390
|||||||||| |||||||||||||||||| | | | | |||||||||||||
Sbjct: 173 tttaagactctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgcacg 114
Query: 391 cgctttacctgtgtttcctctgctcctaccatcttgctaagaggttgtctctctcagg 448
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgttttacctgtgtttcctctgctcctaccatcttgctaagaggttgtctctctcagg 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 846
Length adjustment: 10
Effective length of query: 438
Effective length of database: 836
Effective search space: 366168
Effective search space used: 366168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
