Query= MSMg01no543_n01.b1 MSMg01no543_n01.b1 CHROMAT_FILE:
MSMg01no543_n01.b1 PHD_FILE: MSMg01no543_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
(692 letters)
>mm_chr2_114467385_114468476
Length = 1092
Score = 1324 bits (685), Expect = 0.0
Identities = 688/689 (99%)
Strand = Plus / Minus
Query: 4 ggaattctctggactttgttttcattgtttcttcctaacgggctatacttttgtaagttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ggaattctctggactttgttttcattgtttcttcctaacgggctatacttttgtaagttt 833
Query: 64 tatatctgtcttttgtttttatagatattttgcctagggtgtactttattttgcatataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tatatctgtcttttgtttttatagatattttgcctagggtgtactttattttgcatataa 773
Query: 124 ttaaatttgtctaagtagcaaagtcttagaactataaacttcagaaagtttagagttaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttaaatttgtctaagtagcaaagtcttagaactataaacttcagaaagtttagagttaca 713
Query: 184 agtttcccgtgttgttgaagtcaggaaagctaacagcaatgtcgtaatccctcttctctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 agtttcccgtgttgttgaagtcaggaaagctaacagcaatgtcgtaatccctcttctctc 653
Query: 244 ttcagttgctaggtaactgtgaatctgaaatatagatatctgaagctgtttgtaacatat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttcagttgctaggtaactgtgaatctgaaatatagatatctgaagctgtttgtaacatat 593
Query: 304 ttggttttatgacttatcttttgtcttctaatattgaaatgtaactttgattcttttgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttggttttatgacttatcttttgtcttctaatattgaaatgtaactttgattcttttgta 533
Query: 364 gtttaatatggtgtagtttaccttttctaaaatgatttattaatcatatgttagtttttg 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 gtttaatatggtgtagtttaccttttctaaaatgatttattaataatatgttagtttttg 473
Query: 424 tttaaagtgtaaacaacataatagttattaaaagatacatagtagcatcatttttctata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttaaagtgtaaacaacataatagttattaaaagatacatagtagcatcatttttctata 413
Query: 484 gagccatttttaaggatcaatatatttctctctttctctattgatttggtgctgttttct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gagccatttttaaggatcaatatatttctctctttctctattgatttggtgctgttttct 353
Query: 544 ttctagatatgtgttgtcttcccaccatccccatttcagtagaacctttaagaaatttcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttctagatatgtgttgtcttcccaccatccccatttcagtagaacctttaagaaatttcc 293
Query: 604 taatggcaaatcctttcaagttcttacactttgaaatgttcatattttactgaacattaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taatggcaaatcctttcaagttcttacactttgaaatgttcatattttactgaacattaa 233
Query: 664 gtgtgtttcctatgactcttccataactg 692
|||||||||||||||||||||||||||||
Sbjct: 232 gtgtgtttcctatgactcttccataactg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n01.g1 MSMg01no543_n01.g1 CHROMAT_FILE:
MSMg01no543_n01.g1 PHD_FILE: MSMg01no543_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(648 letters)
>mm_chr2_114287129_114288176
Length = 1048
Score = 1166 bits (603), Expect = 0.0
Identities = 639/653 (97%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 1 tcccctgcatacctcaaaaacaaatcagggattctaaatatgaagaacaaaaccaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcccctgcatacctcaaaaacaaatcagggattctaaatatgaagaacaaaaccaaaaaa 255
Query: 61 gggaaatggaaataagagagtaaaattacttacaaatataaacgtttattggctgtagaa 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 256 gtgaaatggaaataagagagtaaaattacttacaaatataaacgtttattggctatagaa 315
Query: 121 aacagtaactagcaatgtgctctggggggatgaagcatgcattaataaatatgaatattg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 316 aacagtaactagcaatgtgctctggggggatgaagcatggattaataaatatgaatattg 375
Query: 181 ggatgactgtaaacaaaacaaaaaggctggagggtcagaagttaagatcatccttgaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggatgactgtaaacaaaacaaaaaggctggagggtcagaagttaagatcatccttgaaca 435
Query: 241 ttactgtaaatcacttgcaatataaaacatcaccacacagcttt-attaacacaccaaag 299
||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 436 ttattgtaaatcgcttgcaatataaaacatcaccacacagcttttattaacacaccaaag 495
Query: 300 cagttaccaaagcccaagtctatctgtctcagtgaacttctatcacaaacatatcagcaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagttaccaaagcccaagtctatctgtctcagtgaacttctatcacaaacatatcagcaa 555
Query: 360 ttatattaaaagtaatcttcagctggtcggtggtgacacatgcctttaatcccagcactt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttatattaaaagtaatcttcagctggtcggtggtgacacatgcctttaatcccagcactt 615
Query: 420 ggggggcagaggtaggtggatttctgagttcaaggctagcctggtctacaaagtgagttc 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gggaggcagaggtaggtggatttctgagttcaaggctagcctggtctacaaagtgagttc 675
Query: 480 taggacatccagggctacacagagaaaccctgtcttgaaaaacccaaacaaacaaacaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taggacatccagggctacacagagaaaccctgtcttgaaaaacccaaacaaacaaacaaa 735
Query: 540 caaac----tcttcaattcaaaggtaaatggcatgaagactggattgaaagtatgactag 595
||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 caaacaaactcttcaatttaaaggtaaatggcatgaagactagattgaaagtatgactag 795
Query: 596 gcactacttaaaagagatagttcttaagcataagggtggatataggttagagg 648
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 796 gcactacttaaaagagatagttcttaagcataagggtggataaaggttagagg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
