Query= MSMg01no543_o22.b1 MSMg01no543_o22.b1 CHROMAT_FILE:
MSMg01no543_o22.b1 PHD_FILE: MSMg01no543_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:26 2005
(599 letters)
>mm_chr2_10291765_10292768
Length = 1004
Score = 1118 bits (578), Expect = 0.0
Identities = 593/600 (98%), Gaps = 5/600 (0%)
Strand = Plus / Minus
Query: 5 gaattctttagctctaaagcgtctcgccttgcccatacacctccgtttagtacagagcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaattctttagctctaaagcgtctcgccttgcccatacacctccgtttagtacagagcca 745
Query: 65 tctaaaaccctgaaggccccagtcattcgcttatcagtattctctgaggttcacactttt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctaagaccctgaaggccccagtcattcgcttatcagtattctctgaggttcacactttt 685
Query: 125 atcacccgccggagtttgccactcccga----agcttcccggtgtccaactcttaggaac 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 atcacccgccggagtttgccactcccgaagctagcttcccggtgtccaactcttaggaac 625
Query: 181 accaatgta-tttttgagctcatcatccttaaggtcggagtctcctgacggcagaaactt 239
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 accaatgtattttttgagctcatcatccttaaggtcggagactcctgacggcagaaactt 565
Query: 240 ctcaaaaataaattaatcccgtccctgaacattattcatcccatctacacccgcaactgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcaaaaataaattaatcccgtccctgaacattattcatcccatctacacccgcaactgc 505
Query: 300 ttcttttattaacccaaggtggtctcaggtgaagaatccgaggattccagagtgtatgtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcttttattaacccaaggtggtctcaggtgaagaatccgaggattccagagtgtatgtc 445
Query: 360 caggtttaggtctcaaagtcccaacttacctcttctcactccttcaactcgcagctgatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggtttaggtctcaaagtcccaacttacctcttctcactccttcaactcgcagctgatc 385
Query: 420 cttcagaaagaggtgggaaagaggctcaaagtcacctttagaggcttagacccacaagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcagaaagaggtgggaaagaggctcaaagtcacctttagaggcttagacccacaagac 325
Query: 480 ccaacctgcgcttccgtccaggggagtggtcagggtcctgtccttcccccttccctccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaacctgcgcttccgtccaggggagtggtcagggtcctgtccttcccccttccctccct 265
Query: 540 cctccccccaataaccaagcgcaaagcactcttagaccggaatagctctcaactcacact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctccccccaataaccaagcgcaaagcactcttagaccggaatagctctcaactcacact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1004
Length adjustment: 10
Effective length of query: 589
Effective length of database: 994
Effective search space: 585466
Effective search space used: 585466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_o22.g1 MSMg01no543_o22.g1 CHROMAT_FILE:
MSMg01no543_o22.g1 PHD_FILE: MSMg01no543_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:26 2005
(606 letters)
>mm_chr2_10129013_10130016
Length = 1004
Score = 1112 bits (575), Expect = 0.0
Identities = 598/609 (98%), Gaps = 8/609 (1%)
Strand = Plus / Plus
Query: 1 cttattggagtctgatttggtgatttttctcctttagattagctttctctagttttagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttattggagtctgatttggtgatttttctcctttagattagctttctctagttttagaa 260
Query: 61 tgatggcttcttgaatattcttcctgagaggttttccttcaatattctatgagtttgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatggcttcttgaatattcttcctgagaggttttccttcaatattctatgagtttgggg 320
Query: 121 attcacagatgtgagaattacctttcattgtcagttggtcac-aat--gaaatgttggga 177
|||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 321 attcacagatgtgagaattacctttcattgtcagttggtcacaaatgggaa-----ggga 375
Query: 178 ggcgcaatcaggtttcctctgggtaaggttgtcctgaggtggcatgtctaggggatcttt 237
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 ggcgcagtcaggtttcctctgggtaaggttgccctgaggtggcatgtctaggggatcttt 435
Query: 238 attatgttagagaagactccctccccactatgggcagcatcattccctaggggattctga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attatgttagagaagactccctccccactatgggcagcatcattccctaggggattctga 495
Query: 298 actgtctaagagtaaagaaatgtagctgagaactcatgtgtattcattcctagaaatact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actgtctaagagtaaagaaatgtagctgagaactcatgtgtattcattcctagaaatact 555
Query: 358 aaattgatttataacaggaaaactgttctctatgcactcgggggctcagcaaagataatc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaattgatttataacaggaaaactgttctctatgcactcgggggctcagcaaagataatc 615
Query: 418 agtgagctgcattagggaaaataggttccctactcactggttttatagtcaagggcaagt 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 616 agtgagctgcattagggaaaataggttccctactcactggttttatagccaagggcaagt 675
Query: 478 ctttaagaataaaagagacaaaagtaattacagagaataaaaacaattacttcaggtaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctttaagaataaaagagacaaaagtaattacagagaataaaaacaattacttcaggtaaa 735
Query: 538 agaaaaatttaaacttgtgctacaaattaaaaacaaaaacaataaatgactggaaagctg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agaaaaatttaaacttgtgctacaaattaaaaacaaaaacaataaatgactggaaagctg 795
Query: 598 tatgcagga 606
|||||||||
Sbjct: 796 tatgcagga 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
