Query= MSMg01no544_d14.b1 MSMg01no544_d14.b1 CHROMAT_FILE:
MSMg01no544_d14.b1 PHD_FILE: MSMg01no544_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:49 2005
(671 letters)
>mm_chr2_124777809_124778878
Length = 1070
Score = 1251 bits (647), Expect = 0.0
Identities = 665/671 (99%), Gaps = 1/671 (0%)
Strand = Plus / Plus
Query: 1 attccttgacattctcgctttaaacgggaacaagatgcccaggagttaagcatactatag 60
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttgacaaact-gctttagacgggaacaagatgcccaggagttaagcatactatag 259
Query: 61 tccacagtagtgactccaacagttgttatccaaggaactaagcctatcctctgtcctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccacagtagtgactccaacagttgttatccaaggaactaagcctatcctctgtcctgtt 319
Query: 121 gagacatcatctatctcctttgtgtgagggtaatagtgcagttactatttaattaagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagacatcatctatctcctttgtgtgagggtaatagtgcagttactatttaattaagaac 379
Query: 181 agcttccaaagaataacaatcagttcgcaaattaccctgggtgcagagctgacaaggaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcttccaaagaataacaatcagttcgcaaattaccctgggtgcagagctgacaaggaac 439
Query: 241 tgcaggtcattatggcagtagatgcagatgcattggaagggacagggggcttcttcaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcaggtcattatggcagtagatgcagatgcattggaagggacagggggcttcttcaccc 499
Query: 301 agcctgccccgaccctcacttgctctgcagatttacagactccagagttcttccaagttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcctgccccgaccctcacttgctctgcagatttacagactccagagttcttccaagttg 559
Query: 361 tcatcccagggaattttgacacatcaaagtatttcttaggtcaggggccaaacccactag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcatcccagggaattttgacacatcaaagtatttcttaggtcaggggccaaacccactag 619
Query: 421 gcatggcactgtccctttatcagcgggagaaatgatcaatctgaggaagaatatataatt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 gcatggcactgtccctttatcagcaggagaaatgatcaatctgaggaagaatatataatt 679
Query: 481 catgatgaaattgaagaaagcattaaatcaggagccgacaccagttcaatttactgcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catgatgaaattgaagaaagcattaaatcaggagccgacaccagttcaatttactgcatt 739
Query: 541 gctttgctaagtatattccccactgagccatccaacagcccatcttgatctaaaaacacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctttgctaagtatattccccactgagccatccaacagcccatcttgatctaaaaacacc 799
Query: 601 tgctttggagaaagggtctctcctctttgcatgagcagaaagcaaatagcttcaatcagc 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 tgctttggagaaagggtctctcctctttgcaggagcagaaagcaaatagcttcaatcagc 859
Query: 661 agccatttctg 671
|||||||||||
Sbjct: 860 agccatttctg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_d14.g1 MSMg01no544_d14.g1 CHROMAT_FILE:
MSMg01no544_d14.g1 PHD_FILE: MSMg01no544_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:49 2005
(610 letters)
>mm_chr2_124964282_124965292
Length = 1011
Score = 1158 bits (599), Expect = 0.0
Identities = 608/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Minus
Query: 1 acacagagctaagaaagccacaatttctagatgaaacattgaaaaactttctcattttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 acacagagctaagaaagccacaatttctagatgaaacattgaaaaactttctcattttga 752
Query: 61 agtaagaatggaacagcattgataaacgaggccagatatcagaattgtttcaccagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agtaagaatggaacagcattgataaacgaggccagatatcagaattgtttcaccagaata 692
Query: 121 gaaatttctagaatgttaacagattgaaggaaatgtggtataatggttaaagagaagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaaatttctagaatgttaacagattgaaggaaatgtggtataatggttaaagagaagatg 632
Query: 181 gaattggacggcaataaagtttggcaaaacaagttttatttgcataaaagtaaaggcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaattggacggcaataaagtttggcaaaacaagttttatttgcataaaagtaaaggcaca 572
Query: 241 caaggataatgcattcaaatgtagtcattttcaataaggacttaaccagatatttga-tt 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 571 caaggataatgcattcaaatgtaatcattttcaataaggacttaaccagatatttgattt 512
Query: 300 tttttaaggagaattaagtcaattcatataatgtttaaagacctgttgtaacttccattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttttaaggagaattaagtcaattcatataatgtttaaagacctgttgtaacttccattt 452
Query: 360 ttaaacaaaatttgagttgagaaagaatgattttgttaatatcttaaaaggaaaaactta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttaaacaaaatttgagttgagaaagaatgattttgttaatatcttaaaaggaaaaactta 392
Query: 420 gactttaatgttctttaaaagaaaaagttgatctagtaggatagttgaaaaggagaaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gactttaatgttctttaaaagaaaaagttgatctagtaggatagttgaaaaggagaaaca 332
Query: 480 caaaggtccaaaaaagcctactcgttgagaccagttctgtctatataggcagataaaaca 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 331 caaaggtccaaaaaagcctactcgttaagaccagttctgtctatataggcagataaaaca 272
Query: 540 aacatggaagccctttggccttcatccttgaagcacttcaaatactgatgcttgaggcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aacatggaagccctttggccttcatccttgaagcacttcaaatactgatgcttgaggcct 212
Query: 600 agcttttttca 610
|||||||||||
Sbjct: 211 agcttttttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
