BAC Information

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BAC

Clone NameMSMg01-544E04
Chromosome2 (Build37)
Map Location 180,638,914 - 180,639,540
singlet/doubletsinglet
Overlap geneYthdf1
Upstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
Downstream geneBirc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544E04.T7 (MSMg01no544_e04.b1)MSMg01-544E04.TJ (MSMg01no544_e04.g1)
ACCAG609601AG609602
length750754
length of high quality
(start - end)		631 (48 - 678)556 (77 - 632)
definitionCHROMAT_FILE: MSMg01no544_e04.b1 PHD_FILE: MSMg01no544_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:52 2005CHROMAT_FILE: MSMg01no544_e04.g1 PHD_FILE: MSMg01no544_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGCTGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGTCCTACATGGAGCTATGAAAGTTTCTCTGTCCCTTTAGT
ACCCAGGAGTAAGCAAAACTGCAGCCCTTGGCTTCCACTGCTTAGAGCAG
ACCCCATAGATTTTCAGCTATAAGAGAGAGACAAGGCACATATAGCAGGG
AAGACAAGAACACACAAGCTTGCTCAACAGGTGTTTATTAAGGCTTGTAT
TCTCCTAGAGGACAGGTATCCGATGTTGTCCACGACTCCGTACAGGCAGT
AACAGCTCGAGGAAGTGACACGTTCTAAATACAAGTCTAAATAATACAGC
TTAAATGTTAACTCAGAGGGTCTTTTGGAGTAAATAGTTTCGGAAGGTAT
CTGCTCTCTAAGACAGTAAAGATCCTCTACAGTGGGCGCGTGCAGATTCA
GTATGCGAGGGCGTCGGGCATGAGCACCACTTTCATGCTAAACTCCAACT
CCAGATGGCGGTGAGCTCCTCCGAGGCTCCTCATTCCACAAAACATGATA
GCAAATTTGTTTTCTAAAGGATTTTTTGTTTTTTTGCTTTTTTCACCCAT
TCAACAGGAAAAAAAAATAGACACACAGTGAAATTTACAGTCGGCAGCAG
CATCCATCACACTGCCTGTACTATCAGATTCCTACAATTAAAGCTTAGCG
TTACTGGTATAAAAACTTAAGACAGCATCAGGATTCTCTAGAGAAGAAAG


TGCGATTAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCAGACAGCTTTGTTTCTCGG
TAAAGGCATAACTGCACTGGGTTCTTGTTCCAATTTCAGTGTTTTTCACA
CCTTTGATTCTCTGTCGTCTGTATGTGCATTATCTAAATGTGTATACGGA
CCTATATATGTGTGTGTATGTGAACGTCTGTATGGTATGTGCGTGTGTGT
GTTCTTATGTTTACAAAGTTCATATGTGTATTCATGTGTATGTGTGTGTG
TGTGTTCTTATGTTTACAAAGTTCATATGTGTATTCATGTGTATGTGTGT
GTGTTCTTATGTTTACAAAGTTCATATGTGTATTCATGTGTATGCGTGTA
AGTACATACGTATACATATGTGTGGCATCTATATGTGTGTATGCATGTGT
GTATATGTATGTGCATGTATGTGTGCATCATGTGTAAGAACATACATGTA
CACATATGTGGTATCTAAATGTGTGTATATGCATGCATGTATATGCATGT
GCATGTATGTGTATATGTCTTTACAGATGTCATAGTACATGTATGGAGAT
TAGATGACTTCTTGTGGGAGTTGGTTCTCTCCTTCCAGCATGTGGGTTCT
GGAGACTGAAGTCAGATCATCANGCGTGGCAGCAAGTGCTCTCCACTGAG
ACTGGATTTTCAGAATTTTGAGGTGGACGTTCTCAGGCACAGTTCTTTTG
GTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_e04.b1 MSMg01no544_e04.b1 CHROMAT_FILE:
MSMg01no544_e04.b1 PHD_FILE: MSMg01no544_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:52 2005
         (631 letters)



>mm_chr2_180638710_180639740
          Length = 1031

 Score = 1197 bits (619), Expect = 0.0
 Identities = 625/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtcctacatggagctatgaaagtttctctgtccctttagtacccaggagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtcctacatggagctatgaaagtttctctgtccctttagtacccaggagta 264

                                                                       
Query: 65  agcaaaactgcagcccttggcttccactgcttagagcagaccccatagattttcagctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaaaactgcagcccttggcttccactgcttagagcagaccccatagattttcagctat 324

                                                                       
Query: 125 aagagagagacaaggcacatatagcagggaagacaagaacacacaagcttgctcaacagg 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aagagagagacaaggcacatatagcagggaaaacaagaacacacaagcttgctcaacagg 384

                                                                       
Query: 185 tgtttattaaggcttgtattctcctagaggacaggtatccgatgttgtccacgactccgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtttattaaggcttgtattctcctagaggacaggtatccgatgttgtccacgactccgt 444

                                                                       
Query: 245 acaggcagtaacagctcgaggaagtgacacgttctaaatacaagtctaaataatacagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaggcagtaacagctcgaggaagtgacacgttctaaatacaagtctaaataatacagct 504

                                                                       
Query: 305 taaatgttaactcagagggtcttttggagtaaatagtttcggaaggtatctgctctctaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatgttaactcagagggtcttttggagtaaatagtttcggaaggtatctgctctctaa 564

                                                                       
Query: 365 gacagtaaagatcctctacagtgggcgcgtgcagattcagtatgcgagggcgtcgggcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacagtaaagatcctctacagtgggcgcgtgcagattcagtatgcgagggcgtcgggcat 624

                                                                       
Query: 425 gagcaccactttcatgctaaactccaactccagatggcggtgagctcctccgaggctcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagcaccactttcatgctaaactccaactccagatggcggtgagctcctccgaggctcct 684

                                                                       
Query: 485 cattccacaaaacatgatagcaaatttgttttctaaaggattttttgtttttttgctttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattccacaaaacatgatagcaaatttgttttctaaaggattttttgtttttttgctttt 744

                                                                       
Query: 545 ttcacccattcaacaggaaaaaaaaatagacacacagtgaaatttacagtcggcagcagc 604
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcacccattcaacagaaaaaaaaaatagacacacagtgaaatttacagtcggcagcagc 804

                                      
Query: 605 atccatcacactgcctgtactatcaga 631
           |||||||||||||||||||||||||||
Sbjct: 805 atccatcacactgcctgtactatcaga 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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