BAC Information

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BAC

Clone NameMSMg01-544F22
Chromosome2 (Build37)
Map Location 29,110,107 - 29,110,719
singlet/doubletsinglet
Overlap genenone
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544F22.T7 (MSMg01no544_f22.b1)MSMg01-544F22.TJ (MSMg01no544_f22.g1)
ACCAG609685AG609686
length750746
length of high quality
(start - end)		616 (51 - 666)605 (78 - 682)
definitionCHROMAT_FILE: MSMg01no544_f22.b1 PHD_FILE: MSMg01no544_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:00 2005CHROMAT_FILE: MSMg01no544_f22.g1 PHD_FILE: MSMg01no544_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTCAGTTCTTGATGGAAAAGCAGGGGCTGCACTCCCAGA
TAAATCCCCTTTTCACACTGACGGGGAAACTGAGGCTAAGAGCAAGAAAA
GTTCTCCTCAAATGCACAGGGCTAGTTAGGTGAGGGGCCAAGAAAGCCCA
GTCTCTCTCCCGTGCTGTGATTGTCGCGGCAGCATCTTTGCATGCGTGGG
TCACAAGAGCCATCCTGAAACTCAGTAGAGCCAGCCCAGGGTCCCGGGTC
ATCTGAACTGGAAGTTAAAAGCATCCTTCTCCATGCCTTGTTGAAGGCAT
CCAGACACTGTATGATGTAACAGCAGGGCACTGCTGGGGATTGATGGCCC
TGCCTGGGGGAGACAGCAGGCCAAAGGCCTACAGGGTCATCACTCACCCT
GGGCAGAAGCCCCACAGTGTGCCCTTCACTGTTGCCTGAGGCACAAATGC
TTACAATCTGAGAGGCTGTGGTCTGCCTGCTTCCTCCAAGGAGTTCCCTC
TGGTTGGAGACACTGAGGCCAGGATAGGAATATGTGTGTATTAGGGGAGA
GGACATTGGCCTGCATCTGCTTTCCTGGACAGCTTGGTGGGGTGGCCCTT
CTTTGAAATCTGAGGATGTGTTCAAGTTGGCACTCAGAANNAGAAGGTCT
TGCCAGTCACACTCGACAGACAGGGAAACTGAAGCTCTGAAAGAACTTGT


TGGACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAAAAACAAAAAGGGGGAAT
CTCTGATGGCCGGCCACCCAAAGAACAATTAGCGCTTTAGCCCTCTTTAC
TTTAAAATTTTTAATTCTGGACGAACATGGTCGTTCAGCTGCAGATAGGC
ATGCCATGACCTGGTCTATCCTTAAACAGGATGTCAAATGGAAAGATGTC
TTAACAGGAAAATGGTATGGCCCAGATCCCGTTATTTCGAGATCCAGGGG
AGCTGTTTGTGTTTTTCCACGGGGTCAAGAACACCCGATTTGGGTACCAT
AGAGGCTGATGTGAAAATTGCTCCCCCCCCCCCGACAGAGATATAGATTG
TAATAGTTCCAGAAGGACATGGTTTTTAGCAGAGTATTGGCAGGGTATAC
TGTGTGGTTGTGAAACTTCCCACCTTCCTGCCTGTAGTAGATTTTGAAAT
GTTTGCCACCTATGCCCATTGGTGCTACTCACTGAGTGGTCCAATTTGAA
CCTCTTTTCCTCAAATCTTTGCTTCTGTGTGAGAATGAGTTCATTCACCA
AGAAATTAGGATAGAGATGGTCAATATTGTCCATAACATAATTACACTCG
GGACATCTATTATTGTCCTCCAAACTCTGAAGAATACACTTGTAGCAAAA
GCTGAGGCCACATTTTGTCATGTATGCCTCCTCAGTCATATCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_f22.b1 MSMg01no544_f22.b1 CHROMAT_FILE:
MSMg01no544_f22.b1 PHD_FILE: MSMg01no544_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:00 2005
         (616 letters)



>mm_chr2_29109738_29110753
          Length = 1016

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcagttcttgatggaaaagcaggggctgcactcccagataaatcccctttt 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ggaattcagtcagttcaggatggaaaagcaggggctgcactcccagataaatcccctttt 923

                                                                       
Query: 64  cacactgacggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacagggct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 922 cacactgacggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacacggct 863

                                                                       
Query: 124 agttaggtgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agttaggtgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagc 803

                                                                       
Query: 184 atctttgcatgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atctttgcatgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtc 743

                                                                       
Query: 244 ccgggtcatctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccgggtcatctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatcca 683

                                                                       
Query: 304 gacactgtatgatgtaacagcagggcactgctggggattgatggccctgcctgggggaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gacactgtatgatgtaacagcagggcactgctggggattgatggccctgcctgggggaga 623

                                                                       
Query: 364 cagcaggccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagcaggccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcc 563

                                                                       
Query: 424 cttcactgttgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttcactgttgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttc 503

                                                                       
Query: 484 ctccaaggagttccctctggttggagacactgaggccaggataggaatatgtgtgtatta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctccaaggagttccctctggttggagacactgaggccaggataggaatatgtgtgtatta 443

                                                                       
Query: 544 ggggagaggacattggcctgcatctgctttcctggacagcttggtggggtggcccttctt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggggagaggacattggcctgcatctgctttcctggacagcttggtggggtggcccttctt 383

                        
Query: 604 tgaaatctgagga 616
           |||||||||||||
Sbjct: 382 tgaaatctgagga 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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